Started by upstream project "BIOFORMATS-test-repo" build number 116
originally caused by:
Started by upstream project "Trigger" build number 133
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15157433885602831966.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18159_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:36:29,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:36:29,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:36:29,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:36:29,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:36:29,886 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:36:29,886 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:36:29,886 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:36:29,887 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:36:29,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
[testng] 02:36:29,887 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
[testng] 02:36:29,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 426 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-10 02:36:29,910] [main] java.version = 17.0.2
[testng] 02:36:29,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:36:29,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:29,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-10_02-36-29.log]
[testng] 02:36:29,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-10 02:36:30,012] [main] testng.directory = /data
[testng] [2024-07-10 02:36:30,013] [main] testng.configDirectory = /config
[testng] [2024-07-10 02:36:30,057] [main] testng.multiplier = 1.0
[testng] [2024-07-10 02:36:30,058] [main] testng.in-memory = false
[testng] [2024-07-10 02:36:30,058] [main] testng.allow-missing = false
[testng] [2024-07-10 02:36:30,058] [main] user.language = en
[testng] [2024-07-10 02:36:30,058] [main] user.country = ${user.country}
[testng] [2024-07-10 02:36:30,058] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-10 02:36:30,965] [main] ----------------------------------------
[testng] [2024-07-10 02:36:30,965] [main] Total files: 11
[testng] [2024-07-10 02:36:30,965] [main] Scan time: 0.906 s (82 ms/file)
[testng] [2024-07-10 02:36:30,965] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-10 02:36:32,378] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 02:36:32,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:36:32,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-10_02-36-32.log]
[testng] 02:36:32,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@87d7e08 - End of configuration.
[testng] [2024-07-10 02:36:32,464] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 02:36:32,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:36:32,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-10_02-36-32.log]
[testng] 02:36:32,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a23b340 - End of configuration.
[testng] [2024-07-10 02:36:32,623] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 02:36:32,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:36:32,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-10_02-36-32.log]
[testng] 02:36:32,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef5876e - End of configuration.
[testng] [2024-07-10 02:36:32,682] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 02:36:32,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:36:32,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-10_02-36-32.log]
[testng] 02:36:32,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555c245f - End of configuration.
[testng] [2024-07-10 02:36:32,695] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 02:36:32,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:36:32,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-10_02-36-32.log]
[testng] 02:36:32,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c78e36d - End of configuration.
[testng] [2024-07-10 02:36:32,780] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 02:36:32,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:36:32,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-10_02-36-32.log]
[testng] 02:36:32,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20571f81 - End of configuration.
[testng] [2024-07-10 02:36:32,873] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 02:36:32,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:36:32,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-10_02-36-32.log]
[testng] 02:36:32,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b907758 - End of configuration.
[testng] [2024-07-10 02:36:32,990] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 02:36:32,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:36:32,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:32,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-10_02-36-32.log]
[testng] 02:36:32,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b26b23 - End of configuration.
[testng] [2024-07-10 02:36:33,019] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 02:36:33,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:36:33,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:33,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-10_02-36-33.log]
[testng] 02:36:33,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f57748 - End of configuration.
[testng] [2024-07-10 02:36:33,037] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 02:36:33,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:36:33,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:33,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-10_02-36-33.log]
[testng] 02:36:33,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ebac54 - End of configuration.
[testng] [2024-07-10 02:36:33,109] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 02:36:33,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:36:33,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:33,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-10_02-36-33.log]
[testng] 02:36:33,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68dac730 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS