Started by upstream project "BIOFORMATS-test-repo" build number 116
originally caused by:
 Started by upstream project "Trigger" build number 133
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7118967551614441458.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18169_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:41:03,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:41:03,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 02:41:03,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:41:03,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:41:03,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:41:03,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:41:03,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:41:03,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:41:03,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:41:03,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:41:03,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:41:03,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:41:03,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:41:03,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:41:03,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:41:03,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:41:03,978 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:41:03,979 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:41:03,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:41:03,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:41:03,979 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 02:41:03,980 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 02:41:03,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-10 02:41:03,988] [main] java.version = 17.0.2
   [testng] 02:41:03,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:41:03,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:04,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-10_02-41-04.log]
   [testng] 02:41:04,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-10 02:41:04,035] [main] testng.directory = /data
   [testng] [2024-07-10 02:41:04,036] [main] testng.configDirectory = /config
   [testng] [2024-07-10 02:41:04,049] [main] testng.multiplier = 1.0
   [testng] [2024-07-10 02:41:04,049] [main] testng.in-memory = false
   [testng] [2024-07-10 02:41:04,049] [main] testng.allow-missing = false
   [testng] [2024-07-10 02:41:04,050] [main] user.language = en
   [testng] [2024-07-10 02:41:04,050] [main] user.country = ${user.country}
   [testng] [2024-07-10 02:41:04,050] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-10 02:41:06,191] [main] ----------------------------------------
   [testng] [2024-07-10 02:41:06,191] [main] Total files: 31
   [testng] [2024-07-10 02:41:06,191] [main] Scan time: 2.141 s (69 ms/file)
   [testng] [2024-07-10 02:41:06,191] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 30 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-10 02:41:08,806] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: 
   [testng] 02:41:08,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:41:08,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:08,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-10_02-41-08.log]
   [testng] 02:41:08,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2386c992 - End of configuration.
   [testng] [2024-07-10 02:41:08,850] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: 
   [testng] 02:41:08,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:41:08,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:08,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-10_02-41-08.log]
   [testng] 02:41:08,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c863d84 - End of configuration.
   [testng] [2024-07-10 02:41:08,876] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: 
   [testng] 02:41:08,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:41:08,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:08,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-10_02-41-08.log]
   [testng] 02:41:08,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2704605 - End of configuration.
   [testng] [2024-07-10 02:41:08,906] [pool-1-thread-10] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: 
   [testng] 02:41:08,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:41:08,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:08,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-10_02-41-08.log]
   [testng] 02:41:08,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78011549 - End of configuration.
   [testng] [2024-07-10 02:41:08,971] [pool-1-thread-9] Initializing /data/david/multichannel-2d test.jp2: 
   [testng] 02:41:08,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:41:08,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:08,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-10_02-41-08.log]
   [testng] 02:41:08,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64a00c2e - End of configuration.
   [testng] [2024-07-10 02:41:09,016] [pool-1-thread-8] Initializing /data/big-images/2kx2k.jpf: 
   [testng] 02:41:09,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:41:09,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-10_02-41-09.log]
   [testng] 02:41:09,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8c88b6 - End of configuration.
   [testng] [2024-07-10 02:41:09,077] [pool-1-thread-7] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: 
   [testng] 02:41:09,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:41:09,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-10_02-41-09.log]
   [testng] 02:41:09,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334b391d - End of configuration.
   [testng] [2024-07-10 02:41:09,105] [pool-1-thread-6] Initializing /data/kraig/head.jp2: 
   [testng] 02:41:09,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:41:09,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-10_02-41-09.log]
   [testng] 02:41:09,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23eb7642 - End of configuration.
   [testng] [2024-07-10 02:41:09,153] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: 
   [testng] 02:41:09,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:41:09,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-10_02-41-09.log]
   [testng] 02:41:09,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c6ed64 - End of configuration.
   [testng] [2024-07-10 02:41:09,435] [pool-1-thread-4] Initializing /data/vikram/Captured 5.jp2: 
   [testng] 02:41:09,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:41:09,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-10_02-41-09.log]
   [testng] 02:41:09,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ae94a4e - End of configuration.
   [testng] [2024-07-10 02:41:09,493] [pool-1-thread-3] Initializing /data/david/multichannel-3d-MBF-type.jpx: 
   [testng] 02:41:09,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:41:09,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-10_02-41-09.log]
   [testng] 02:41:09,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23f9bf1d - End of configuration.
   [testng] [2024-07-10 02:41:09,853] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: 
   [testng] 02:41:09,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:41:09,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:41:09,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-10_02-41-09.log]
   [testng] 02:41:09,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9420dcc - End of configuration.
   [testng] [2024-07-10 02:41:12,113] [pool-1-thread-1] Initializing /data/angel/052_L050071_56_x2hv.jp2: 
   [testng] [2024-07-10 02:41:12,186] [pool-1-thread-12] Initializing /data/frans/flower.jp2: 
   [testng] [2024-07-10 02:41:12,203] [pool-1-thread-4] Initializing /data/david/000000_000001.jpx: 
   [testng] [2024-07-10 02:41:12,268] [pool-1-thread-2] Initializing /data/venu/Multichannel 3.jp2: 
   [testng] [2024-07-10 02:41:12,410] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: 
   [testng] [2024-07-10 02:41:15,437] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: 
   [testng] [2024-07-10 02:41:16,192] [pool-1-thread-7] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: 
   [testng] [2024-07-10 02:41:17,119] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: 
   [testng] [2024-07-10 02:41:19,359] [pool-1-thread-4] Initializing /data/big-images/8kx8k.jpf: 
   [testng] [2024-07-10 02:41:20,436] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: 
   [testng] [2024-07-10 02:41:21,232] [pool-1-thread-8] Initializing /data/venu/Multichannel 3a.jpg: 
   [testng] [2024-07-10 02:41:22,333] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: 
   [testng] [2024-07-10 02:41:22,788] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: 
   [testng] [2024-07-10 02:41:23,989] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: 
   [testng] [2024-07-10 02:41:24,443] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jpc: 
   [testng] [2024-07-10 02:41:25,109] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jbig: 
   [testng] [2024-07-10 02:41:25,439] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: 
   [testng] [2024-07-10 02:41:26,151] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1590, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 5 minutes 59 seconds
Finished: SUCCESS