Started by upstream project "BIOFORMATS-test-repo" build number 116
originally caused by:
Started by upstream project "Trigger" build number 133
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins7309750495962773054.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18171_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:43:46,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:43:46,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:43:46,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:46,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:46,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:43:46,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:43:46,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:43:46,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:46,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:46,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:43:46,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:43:46,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:43:47,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:47,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:47,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:47,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:47,155 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:47,155 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:47,155 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:47,156 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:47,156 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:43:47,157 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:43:47,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 224 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-10 02:43:47,167] [main] java.version = 17.0.2
[testng] 02:43:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:47,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-10_02-43-47.log]
[testng] 02:43:47,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-10 02:43:47,222] [main] testng.directory = /data
[testng] [2024-07-10 02:43:47,222] [main] testng.configDirectory = /config
[testng] [2024-07-10 02:43:47,232] [main] testng.multiplier = 1.0
[testng] [2024-07-10 02:43:47,233] [main] testng.in-memory = false
[testng] [2024-07-10 02:43:47,233] [main] testng.allow-missing = false
[testng] [2024-07-10 02:43:47,233] [main] user.language = en
[testng] [2024-07-10 02:43:47,233] [main] user.country = ${user.country}
[testng] [2024-07-10 02:43:47,233] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-10 02:43:48,519] [main] ----------------------------------------
[testng] [2024-07-10 02:43:48,519] [main] Total files: 22
[testng] [2024-07-10 02:43:48,519] [main] Scan time: 1.285 s (58 ms/file)
[testng] [2024-07-10 02:43:48,519] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-10 02:43:56,553] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif:
[testng] 02:43:56,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:56,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-10_02-43-56.log]
[testng] 02:43:56,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6525ad - End of configuration.
[testng] [2024-07-10 02:43:56,761] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF:
[testng] 02:43:56,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:43:56,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-10_02-43-56.log]
[testng] 02:43:56,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27d6d08 - End of configuration.
[testng] [2024-07-10 02:43:56,799] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 02:43:56,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:56,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-10_02-43-56.log]
[testng] 02:43:56,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f73b1e - End of configuration.
[testng] [2024-07-10 02:43:56,832] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq:
[testng] 02:43:56,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:56,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-10_02-43-56.log]
[testng] 02:43:56,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68161576 - End of configuration.
[testng] [2024-07-10 02:43:56,933] [pool-1-thread-9] Initializing /data/converted/dub01.ipw:
[testng] 02:43:56,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:56,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-10_02-43-56.log]
[testng] 02:43:56,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420ec483 - End of configuration.
[testng] [2024-07-10 02:43:56,969] [pool-1-thread-8] Initializing /data/converted/clown.ipw:
[testng] 02:43:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-10_02-43-56.log]
[testng] 02:43:56,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203e9a0 - End of configuration.
[testng] [2024-07-10 02:43:56,987] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 02:43:56,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:56,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:56,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-10_02-43-56.log]
[testng] 02:43:56,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d90057d - End of configuration.
[testng] [2024-07-10 02:43:57,021] [pool-1-thread-6] Initializing /data/converted/clown8c.seq:
[testng] 02:43:57,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:57,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:57,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-10_02-43-57.log]
[testng] 02:43:57,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a15d4a - End of configuration.
[testng] [2024-07-10 02:43:57,042] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw:
[testng] 02:43:57,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:57,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:57,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-10_02-43-57.log]
[testng] 02:43:57,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438f6061 - End of configuration.
[testng] [2024-07-10 02:43:57,089] [pool-1-thread-4] Initializing /data/converted/clown.tif:
[testng] 02:43:57,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:57,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:57,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-10_02-43-57.log]
[testng] 02:43:57,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d808a3 - End of configuration.
[testng] [2024-07-10 02:43:57,109] [pool-1-thread-3] Initializing /data/converted/clown.seq:
[testng] 02:43:57,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:57,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:57,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-10_02-43-57.log]
[testng] 02:43:57,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c90a0bb - End of configuration.
[testng] [2024-07-10 02:43:57,131] [pool-1-thread-2] Initializing /data/converted/clown8c.tif:
[testng] 02:43:57,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:57,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:57,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-10_02-43-57.log]
[testng] 02:43:57,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6281fdeb - End of configuration.
[testng] [2024-07-10 02:43:58,817] [pool-1-thread-6] Initializing /data/converted/dub01.seq:
[testng] [2024-07-10 02:43:58,839] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ:
[testng] [2024-07-10 02:43:58,858] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-07-10 02:43:58,918] [pool-1-thread-5] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-07-10 02:43:58,959] [pool-1-thread-2] Initializing /data/samples/PROBE.TIF:
[testng] [2024-07-10 02:43:58,973] [pool-1-thread-9] Initializing /data/converted/dub01.pic:
[testng] [2024-07-10 02:43:58,998] [pool-1-thread-12] Initializing /data/converted/clown8c.ipw:
[testng] [2024-07-10 02:43:59,012] [pool-1-thread-11] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-07-10 02:43:59,045] [pool-1-thread-7] Initializing /data/converted/mitosis-test.seq:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS