Started by upstream project "BIOFORMATS-test-repo" build number 117
originally caused by:
Started by upstream project "Trigger" build number 134
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1658554856145541601.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18228_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:33:23,962 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:33:23,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:33:23,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:33:23,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:33:23,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:33:23,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:33:23,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:33:23,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:33:23,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:33:23,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:33:23,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:33:23,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:33:24,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:33:24,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:33:24,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:33:24,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:33:24,385 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:33:24,386 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:33:24,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:33:24,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:33:24,386 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:33:24,393 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:33:24,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 428 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-11 01:33:24,402] [main] java.version = 21
[testng] 01:33:24,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:33:24,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:24,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-11_01-33-24.log]
[testng] 01:33:24,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-11 01:33:24,538] [main] testng.directory = /data
[testng] [2024-07-11 01:33:24,538] [main] testng.configDirectory = /config
[testng] [2024-07-11 01:33:24,579] [main] testng.multiplier = 1.0
[testng] [2024-07-11 01:33:24,580] [main] testng.in-memory = false
[testng] [2024-07-11 01:33:24,580] [main] testng.allow-missing = false
[testng] [2024-07-11 01:33:24,580] [main] user.language = en
[testng] [2024-07-11 01:33:24,580] [main] user.country = ${user.country}
[testng] [2024-07-11 01:33:24,580] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-11 01:33:25,154] [main] ----------------------------------------
[testng] [2024-07-11 01:33:25,154] [main] Total files: 25
[testng] [2024-07-11 01:33:25,154] [main] Scan time: 0.573 s (22 ms/file)
[testng] [2024-07-11 01:33:25,155] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-11 01:33:26,961] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:33:26,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:33:26,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:26,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-11_01-33-26.log]
[testng] 01:33:26,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16b709a3 - End of configuration.
[testng] [2024-07-11 01:33:26,983] [pool-1-thread-12] Initializing /data/misc/planet.png:
[testng] 01:33:26,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:33:26,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:26,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-11_01-33-26.log]
[testng] 01:33:26,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5544db0d - End of configuration.
[testng] [2024-07-11 01:33:26,992] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:33:26,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:33:26,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-11_01-33-27.log]
[testng] 01:33:27,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b7c2f - End of configuration.
[testng] [2024-07-11 01:33:27,047] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT:
[testng] 01:33:27,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:33:27,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-11_01-33-27.log]
[testng] 01:33:27,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec3275a - End of configuration.
[testng] [2024-07-11 01:33:27,129] [pool-1-thread-9] Initializing /data/jqd/mire32.pict:
[testng] 01:33:27,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:33:27,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-11_01-33-27.log]
[testng] 01:33:27,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ec76f9 - End of configuration.
[testng] [2024-07-11 01:33:27,180] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:33:27,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:33:27,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-11_01-33-27.log]
[testng] 01:33:27,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3a6287 - End of configuration.
[testng] [2024-07-11 01:33:27,201] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:33:27,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:33:27,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-11_01-33-27.log]
[testng] 01:33:27,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43cde3e7 - End of configuration.
[testng] [2024-07-11 01:33:27,267] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:33:27,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:33:27,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-11_01-33-27.log]
[testng] 01:33:27,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration.
[testng] [2024-07-11 01:33:27,489] [pool-1-thread-5] Initializing /data/misc/swlogo.pict:
[testng] 01:33:27,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:33:27,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-11_01-33-27.log]
[testng] 01:33:27,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca52ea - End of configuration.
[testng] [2024-07-11 01:33:27,528] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct:
[testng] 01:33:27,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:33:27,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-11_01-33-27.log]
[testng] 01:33:27,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbc3868 - End of configuration.
[testng] [2024-07-11 01:33:27,568] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:33:27,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:33:27,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-11_01-33-27.log]
[testng] 01:33:27,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f464403 - End of configuration.
[testng] [2024-07-11 01:33:27,758] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT:
[testng] 01:33:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:33:27,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:33:27,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-11_01-33-27.log]
[testng] 01:33:27,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342a5d84 - End of configuration.
[testng] [2024-07-11 01:33:29,250] [pool-1-thread-9] Initializing /data/misc/planet2.pict:
[testng] [2024-07-11 01:33:29,285] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] [2024-07-11 01:33:29,293] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-07-11 01:33:29,615] [pool-1-thread-1] Initializing /data/jqd/32bit.pict:
[testng] [2024-07-11 01:33:29,647] [pool-1-thread-12] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-07-11 01:33:29,663] [pool-1-thread-2] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-07-11 01:33:29,673] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-07-11 01:33:29,687] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-07-11 01:33:29,849] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT:
[testng] [2024-07-11 01:33:29,966] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32.pct:
[testng] [2024-07-11 01:33:29,984] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-07-11 01:33:30,021] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-07-11 01:33:30,127] [pool-1-thread-9] Initializing /data/misc/planet.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS