Started by upstream project "BIOFORMATS-test-repo" build number 117
originally caused by:
Started by upstream project "Trigger" build number 134
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3238298112545390196.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18263_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:01:37,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:01:37,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 02:01:37,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:01:37,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:01:37,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:01:37,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:01:37,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:01:37,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:01:37,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:01:37,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:01:37,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:01:37,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:01:38,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:01:38,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:01:38,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:01:38,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:01:38,267 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:01:38,268 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:01:38,268 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:01:38,268 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:01:38,268 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 02:01:38,269 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 02:01:38,269 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-11 02:01:38,291] [main] java.version = 21
[testng] 02:01:38,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:01:38,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:01:38,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-11_02-01-38.log]
[testng] 02:01:38,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-11 02:01:38,387] [main] testng.directory = /data
[testng] [2024-07-11 02:01:38,387] [main] testng.configDirectory = /config
[testng] [2024-07-11 02:01:38,505] [main] testng.multiplier = 1.0
[testng] [2024-07-11 02:01:38,506] [main] testng.in-memory = false
[testng] [2024-07-11 02:01:38,506] [main] testng.allow-missing = false
[testng] [2024-07-11 02:01:38,506] [main] user.language = en
[testng] [2024-07-11 02:01:38,506] [main] user.country = ${user.country}
[testng] [2024-07-11 02:01:38,506] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-11 02:01:39,786] [main] ----------------------------------------
[testng] [2024-07-11 02:01:39,786] [main] Total files: 40
[testng] [2024-07-11 02:01:39,786] [main] Scan time: 1.28 s (32 ms/file)
[testng] [2024-07-11 02:01:39,786] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-11 02:06:11,171] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] 02:06:11,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:06:11,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-11_02-06-11.log]
[testng] 02:06:11,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d15f6fc - End of configuration.
[testng] [2024-07-11 02:06:11,218] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 02:06:11,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:06:11,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-11_02-06-11.log]
[testng] 02:06:11,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cebca2f - End of configuration.
[testng] [2024-07-11 02:06:11,232] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] 02:06:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:06:11,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-11_02-06-11.log]
[testng] 02:06:11,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ff20981 - End of configuration.
[testng] [2024-07-11 02:06:11,291] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] 02:06:11,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:06:11,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-11_02-06-11.log]
[testng] 02:06:11,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7924cc7d - End of configuration.
[testng] [2024-07-11 02:06:11,307] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] 02:06:11,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:06:11,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-11_02-06-11.log]
[testng] 02:06:11,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e68d50 - End of configuration.
[testng] [2024-07-11 02:06:11,344] [pool-1-thread-8] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] 02:06:11,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:06:11,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-11_02-06-11.log]
[testng] 02:06:11,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78d87468 - End of configuration.
[testng] [2024-07-11 02:06:11,359] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 02:06:11,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:06:11,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-11_02-06-11.log]
[testng] 02:06:11,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cebe620 - End of configuration.
[testng] [2024-07-11 02:06:11,368] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi:
[testng] 02:06:11,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:06:11,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-11_02-06-11.log]
[testng] 02:06:11,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5f8f34 - End of configuration.
[testng] [2024-07-11 02:06:11,415] [pool-1-thread-5] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 02:06:11,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:06:11,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-11_02-06-11.log]
[testng] 02:06:11,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca9cc48 - End of configuration.
[testng] [2024-07-11 02:06:11,428] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] 02:06:11,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:06:11,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-11_02-06-11.log]
[testng] 02:06:11,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6792290f - End of configuration.
[testng] [2024-07-11 02:06:11,465] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 02:06:11,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:06:11,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-11_02-06-11.log]
[testng] 02:06:11,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a35670b - End of configuration.
[testng] [2024-07-11 02:06:11,487] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] 02:06:11,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:06:11,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:06:11,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-11_02-06-11.log]
[testng] 02:06:11,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@221e2cf - End of configuration.
[testng] [2024-07-11 02:06:12,536] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] [2024-07-11 02:06:12,552] [pool-1-thread-12] Initializing /data/kurt/63x_6um.avi:
[testng] [2024-07-11 02:06:12,654] [pool-1-thread-3] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-07-11 02:06:13,037] [pool-1-thread-5] Initializing /data/ascb/TIRF.avi:
[testng] [2024-07-11 02:06:13,069] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] [2024-07-11 02:06:13,109] [pool-1-thread-10] Initializing /data/kurt/40x_6um.avi:
[testng] [2024-07-11 02:06:13,154] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-07-11 02:06:20,550] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] [2024-07-11 02:06:20,681] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] [2024-07-11 02:06:20,707] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] [2024-07-11 02:06:20,779] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-07-11 02:06:20,815] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-07-11 02:06:20,913] [pool-1-thread-11] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2024-07-11 02:06:21,325] [pool-1-thread-4] Initializing /data/william/worm.avi:
[testng] [2024-07-11 02:06:21,453] [pool-1-thread-9] Initializing /data/qa-11011/M-flow10001.avi:
[testng] [2024-07-11 02:06:21,564] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-07-11 02:06:21,602] [pool-1-thread-7] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2024-07-11 02:06:21,736] [pool-1-thread-12] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2024-07-11 02:06:21,766] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-07-11 02:06:21,794] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-07-11 02:06:21,864] [pool-1-thread-5] Initializing /data/chris/APZ04_009.avi:
[testng] [2024-07-11 02:06:22,831] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-07-11 02:06:22,862] [pool-1-thread-3] Initializing /data/curtis/mri-stack-bf.avi:
[testng] [2024-07-11 02:06:22,872] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2024-07-11 02:06:22,897] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-07-11 02:06:23,051] [pool-1-thread-1] Initializing /data/kurt/40x_6um_2.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 0 seconds
Finished: SUCCESS