Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
Started by upstream project "Trigger" build number 135
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4549166180932049775.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18352_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:21:44,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:44,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:21:44,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:44,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:44,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:44,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:44,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:44,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:44,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:44,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:44,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:44,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:44,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:44,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:44,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:44,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:45,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:45,005 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:45,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:45,006 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:45,007 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:21:45,008 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:21:45,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 372 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-12 01:21:45,020] [main] java.version = 1.8.0_342
[testng] 01:21:45,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:45,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:45,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_01-21-45.log]
[testng] 01:21:45,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-12 01:21:45,085] [main] testng.directory = /data
[testng] [2024-07-12 01:21:45,086] [main] testng.configDirectory = /config
[testng] [2024-07-12 01:21:45,101] [main] testng.multiplier = 1.0
[testng] [2024-07-12 01:21:45,101] [main] testng.in-memory = false
[testng] [2024-07-12 01:21:45,101] [main] testng.allow-missing = false
[testng] [2024-07-12 01:21:45,101] [main] user.language = en
[testng] [2024-07-12 01:21:45,101] [main] user.country = ${user.country}
[testng] [2024-07-12 01:21:45,101] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-12 01:22:10,193] [main] ----------------------------------------
[testng] [2024-07-12 01:22:10,193] [main] Total files: 283
[testng] [2024-07-12 01:22:10,193] [main] Scan time: 25.092 s (88 ms/file)
[testng] [2024-07-12 01:22:10,193] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-12 01:32:00,956] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] 01:32:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:32:00,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:00,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_01-32-00.log]
[testng] 01:32:00,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ccfc480 - End of configuration.
[testng] [2024-07-12 01:32:01,015] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] 01:32:01,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:32:01,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:01,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_01-32-01.log]
[testng] 01:32:01,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb3ffb7 - End of configuration.
[testng] [2024-07-12 01:32:01,075] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] 01:32:01,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:32:01,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:01,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_01-32-01.log]
[testng] 01:32:01,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@415a79b5 - End of configuration.
[testng] [2024-07-12 01:32:01,130] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] 01:32:01,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:32:01,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:01,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_01-32-01.log]
[testng] 01:32:01,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29dc56ee - End of configuration.
[testng] [2024-07-12 01:32:01,913] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] 01:32:01,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:32:01,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:01,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_01-32-01.log]
[testng] 01:32:01,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3410547a - End of configuration.
[testng] [2024-07-12 01:32:01,985] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] 01:32:01,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:32:01,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:01,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_01-32-01.log]
[testng] 01:32:01,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca17af7 - End of configuration.
[testng] [2024-07-12 01:32:02,060] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] 01:32:02,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:32:02,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_01-32-02.log]
[testng] 01:32:02,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d0bd942 - End of configuration.
[testng] [2024-07-12 01:32:02,157] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] 01:32:02,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:32:02,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_01-32-02.log]
[testng] 01:32:02,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410f6e73 - End of configuration.
[testng] [2024-07-12 01:32:02,257] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 01:32:02,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:32:02,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_01-32-02.log]
[testng] 01:32:02,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d0a2ba - End of configuration.
[testng] [2024-07-12 01:32:02,606] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] 01:32:02,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:32:02,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_01-32-02.log]
[testng] 01:32:02,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34bcf1bf - End of configuration.
[testng] [2024-07-12 01:32:02,691] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:32:02,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:32:02,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_01-32-02.log]
[testng] 01:32:02,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e85ac44 - End of configuration.
[testng] [2024-07-12 01:32:02,719] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] 01:32:02,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:32:02,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:02,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_01-32-02.log]
[testng] 01:32:02,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75955ace - End of configuration.
[testng] [2024-07-12 01:32:05,809] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-07-12 01:32:06,052] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-07-12 01:32:06,108] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-07-12 01:32:06,254] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-07-12 01:32:06,319] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-07-12 01:32:06,348] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-07-12 01:32:06,601] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-07-12 01:32:06,639] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-07-12 01:32:07,399] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-07-12 01:32:07,572] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-07-12 01:32:07,949] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-07-12 01:32:08,249] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-07-12 01:32:12,828] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-07-12 01:32:13,143] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-07-12 01:32:13,198] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-07-12 01:32:13,556] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-07-12 01:32:13,892] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-07-12 01:32:14,361] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-07-12 01:32:14,563] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-07-12 01:32:14,804] [pool-1-thread-12] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-07-12 01:32:15,524] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-07-12 01:32:15,606] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-07-12 01:32:15,959] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-07-12 01:32:16,216] [pool-1-thread-2] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-07-12 01:32:16,749] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-07-12 01:32:16,845] [pool-1-thread-4] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-07-12 01:32:45,059] [pool-1-thread-7] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-07-12 01:32:45,518] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-07-12 01:32:47,468] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-07-12 01:32:47,634] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-07-12 01:32:47,933] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-07-12 01:32:48,155] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-07-12 01:32:48,512] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-07-12 01:32:48,593] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-07-12 01:32:48,982] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-07-12 01:32:49,291] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-07-12 01:32:49,615] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-07-12 01:32:49,745] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-07-12 01:32:49,789] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-07-12 01:32:49,854] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-07-12 01:32:51,297] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-07-12 01:32:51,419] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-07-12 01:32:51,535] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-07-12 01:32:53,397] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-07-12 01:32:54,153] [pool-1-thread-5] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-07-12 01:32:54,347] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-07-12 01:32:54,516] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-07-12 01:32:54,841] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-07-12 01:32:55,365] [pool-1-thread-9] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-07-12 01:32:55,810] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-07-12 01:32:56,197] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-07-12 01:32:56,320] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-07-12 01:33:27,688] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-07-12 01:33:28,387] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir:
[testng] [2024-07-12 01:33:29,114] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-07-12 01:33:29,342] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-07-12 01:33:29,419] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-07-12 01:33:29,679] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-07-12 01:33:29,810] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-07-12 01:33:30,214] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-07-12 01:33:32,797] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-07-12 01:33:33,873] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-07-12 01:33:34,439] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-07-12 01:33:34,702] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-07-12 01:33:34,831] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-07-12 01:33:35,208] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-07-12 01:33:35,355] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-07-12 01:33:36,873] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-07-12 01:33:37,707] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-07-12 01:33:38,395] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-07-12 01:33:39,132] [pool-1-thread-2] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-07-12 01:33:39,750] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-07-12 01:33:39,810] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-07-12 01:33:43,217] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-07-12 01:33:53,417] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-07-12 01:33:54,462] [pool-1-thread-8] Initializing /data/olympus/XYZt.oir:
[testng] [2024-07-12 01:34:06,802] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-07-12 01:34:07,095] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-07-12 01:34:07,464] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-07-12 01:34:10,071] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-07-12 01:34:11,460] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-07-12 01:34:12,702] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-07-12 01:34:13,995] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-07-12 01:34:15,250] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-07-12 01:34:16,655] [pool-1-thread-2] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-07-12 01:34:30,248] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-07-12 01:34:31,764] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-07-12 01:34:32,743] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-07-12 01:34:32,954] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-07-12 01:34:33,128] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-07-12 01:34:34,688] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-07-12 01:34:34,873] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-07-12 01:34:36,289] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-07-12 01:34:36,459] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-07-12 01:34:37,300] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-07-12 01:34:37,506] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-07-12 01:34:43,295] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-07-12 01:34:43,357] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-07-12 01:34:44,178] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-07-12 01:34:47,719] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-07-12 01:34:48,805] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-07-12 01:34:49,128] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-07-12 01:34:52,752] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-07-12 01:34:53,100] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-07-12 01:34:54,557] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-07-12 01:34:55,121] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-07-12 01:34:55,170] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-07-12 01:34:55,812] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-07-12 01:34:56,350] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-07-12 01:35:48,747] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-07-12 01:35:48,800] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-07-12 01:35:51,312] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-07-12 01:36:03,274] [pool-1-thread-9] Initializing /data/qa-17335/1.oir:
[testng] [2024-07-12 01:36:04,040] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-07-12 01:36:05,186] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-07-12 01:36:05,934] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-07-12 01:36:06,885] [pool-1-thread-9] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-07-12 01:36:08,113] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-07-12 01:36:09,345] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-07-12 01:36:10,808] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-07-12 01:36:12,116] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-07-12 01:36:13,303] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-07-12 01:36:34,946] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-07-12 01:36:46,548] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-07-12 01:36:52,650] [pool-1-thread-6] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-07-12 01:36:54,219] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-07-12 01:36:55,420] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-07-12 01:36:56,340] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-07-12 01:36:57,926] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-07-12 01:36:58,756] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-07-12 01:36:59,715] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-07-12 01:37:01,657] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-07-12 01:37:11,448] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-07-12 01:37:12,370] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-07-12 01:37:13,439] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-07-12 01:37:13,520] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-07-12 01:37:14,563] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-07-12 01:37:15,084] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-07-12 01:37:16,544] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-07-12 01:37:17,718] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-07-12 01:37:17,831] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-07-12 01:37:19,086] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-07-12 01:37:19,960] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-07-12 01:37:20,353] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-07-12 01:37:23,384] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-07-12 01:37:24,009] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-07-12 01:37:25,231] [pool-1-thread-3] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-07-12 01:37:25,526] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-07-12 01:37:26,364] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-07-12 01:37:33,298] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-07-12 01:37:33,431] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-07-12 01:37:33,718] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-07-12 01:37:34,886] [pool-1-thread-12] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-07-12 01:39:41,539] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-07-12 01:40:06,284] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-07-12 01:40:07,062] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-07-12 01:40:08,490] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-07-12 01:40:09,903] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-07-12 01:40:11,156] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-07-12 01:40:12,497] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-07-12 01:40:13,287] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-07-12 01:40:14,538] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-07-12 01:40:17,677] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-07-12 01:40:32,122] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-07-12 01:40:34,097] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-07-12 01:40:36,033] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-07-12 01:40:37,220] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-07-12 01:40:38,856] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-07-12 01:40:50,703] [pool-1-thread-2] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-07-12 01:40:51,967] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-07-12 01:40:52,176] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-07-12 01:40:53,009] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-07-12 01:40:54,183] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-07-12 01:40:55,482] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif:
[testng] 02:35:10,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:35:10,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:10,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-35-10.log]
[testng] 02:35:10,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 73 minutes 29 seconds
Finished: SUCCESS