Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16143634930496192701.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18368_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:08,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:25:08,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:25:08,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:08,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:08,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:25:08,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:25:08,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:25:08,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:08,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:08,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:25:08,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:08,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:09,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:09,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:09,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:09,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:09,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:09,287 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:09,287 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:09,287 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:09,287 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:25:09,288 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:25:09,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 326 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 01:25:09,305] [main] java.version = 1.8.0_342 [testng] 01:25:09,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:09,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:09,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_01-25-09.log] [testng] 01:25:09,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 01:25:09,391] [main] testng.directory = /data [testng] [2024-07-12 01:25:09,391] [main] testng.configDirectory = /config [testng] [2024-07-12 01:25:09,408] [main] testng.multiplier = 1.0 [testng] [2024-07-12 01:25:09,409] [main] testng.in-memory = false [testng] [2024-07-12 01:25:09,409] [main] testng.allow-missing = false [testng] [2024-07-12 01:25:09,409] [main] user.language = en [testng] [2024-07-12 01:25:09,409] [main] user.country = ${user.country} [testng] [2024-07-12 01:25:09,409] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 01:25:22,940] [main] ---------------------------------------- [testng] [2024-07-12 01:25:22,940] [main] Total files: 226 [testng] [2024-07-12 01:25:22,940] [main] Scan time: 13.531 s (59 ms/file) [testng] [2024-07-12 01:25:22,940] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 01:25:33,864] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:25:33,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:33,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:33,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_01-25-33.log] [testng] 01:25:33,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308de7b7 - End of configuration. [testng] [2024-07-12 01:25:34,006] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:25:34,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:34,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_01-25-34.log] [testng] 01:25:34,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ddbf377 - End of configuration. [testng] [2024-07-12 01:25:34,027] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:25:34,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:34,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_01-25-34.log] [testng] 01:25:34,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26067d5b - End of configuration. [testng] [2024-07-12 01:25:34,050] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:25:34,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:34,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_01-25-34.log] [testng] 01:25:34,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab77ca2 - End of configuration. [testng] [2024-07-12 01:25:34,061] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:25:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_01-25-34.log] [testng] 01:25:34,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@717cf468 - End of configuration. [testng] [2024-07-12 01:25:34,125] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:25:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_01-25-34.log] [testng] 01:25:34,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1e397f - End of configuration. [testng] [2024-07-12 01:25:34,173] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:25:34,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:34,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_01-25-34.log] [testng] 01:25:34,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c4159a5 - End of configuration. [testng] [2024-07-12 01:25:34,215] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:25:34,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:34,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_01-25-34.log] [testng] 01:25:34,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1862ce - End of configuration. [testng] [2024-07-12 01:25:34,234] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:25:34,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:34,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_01-25-34.log] [testng] 01:25:34,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9a44b20 - End of configuration. [testng] [2024-07-12 01:25:34,360] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:25:34,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:34,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_01-25-34.log] [testng] 01:25:34,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@660b5427 - End of configuration. [testng] [2024-07-12 01:25:34,372] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:25:34,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:34,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_01-25-34.log] [testng] 01:25:34,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2283dc68 - End of configuration. [testng] [2024-07-12 01:25:34,385] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:25:34,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:34,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:34,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_01-25-34.log] [testng] 01:25:34,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d3bb45b - End of configuration. [testng] [2024-07-12 01:25:36,575] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-07-12 01:25:36,622] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-07-12 01:25:36,659] [pool-1-thread-10] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-07-12 01:25:36,674] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-07-12 01:25:36,726] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-07-12 01:25:36,798] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-07-12 01:25:36,803] [pool-1-thread-6] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-07-12 01:25:36,810] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-07-12 01:25:36,821] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-07-12 01:25:36,839] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-07-12 01:25:37,072] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-07-12 01:25:37,343] [pool-1-thread-7] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-07-12 01:25:37,375] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-07-12 01:25:37,440] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-07-12 01:25:37,615] [pool-1-thread-12] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-07-12 01:25:37,690] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS