Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
Started by upstream project "Trigger" build number 135
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1599904194567505735.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18445_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:16:29,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:16:29,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:16:29,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:16:29,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:16:29,959 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:16:29,959 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:16:29,959 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:16:29,960 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:16:29,960 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:16:29,961 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:16:29,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 437 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-12 02:16:29,973] [main] java.version = 1.8.0_342
[testng] 02:16:29,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:16:29,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:30,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-16-30.log]
[testng] 02:16:30,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-12 02:16:30,050] [main] testng.directory = /data
[testng] [2024-07-12 02:16:30,051] [main] testng.configDirectory = /config
[testng] [2024-07-12 02:16:30,071] [main] testng.multiplier = 1.0
[testng] [2024-07-12 02:16:30,072] [main] testng.in-memory = false
[testng] [2024-07-12 02:16:30,072] [main] testng.allow-missing = false
[testng] [2024-07-12 02:16:30,072] [main] user.language = en
[testng] [2024-07-12 02:16:30,072] [main] user.country = ${user.country}
[testng] [2024-07-12 02:16:30,072] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-12 02:16:40,860] [main] ----------------------------------------
[testng] [2024-07-12 02:16:40,860] [main] Total files: 2539
[testng] [2024-07-12 02:16:40,861] [main] Scan time: 10.788 s (4 ms/file)
[testng] [2024-07-12 02:16:40,861] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-12 02:16:43,806] [pool-1-thread-1] Initializing /data/samples/different-field-count/plate_B03f00d0.C01:
[testng] 02:16:43,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:16:43,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:43,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-16-43.log]
[testng] 02:16:43,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5417cfea - End of configuration.
[testng] [2024-07-12 02:16:43,888] [pool-1-thread-12] Initializing /data/omar/FB03f00d0.C01:
[testng] 02:16:43,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:16:43,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:43,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-16-43.log]
[testng] 02:16:43,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cdfc793 - End of configuration.
[testng] [2024-07-12 02:16:43,928] [pool-1-thread-11] Initializing /data/samples/plate-size/plate_B03f00d0.C01:
[testng] 02:16:43,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:16:43,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:43,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-16-43.log]
[testng] 02:16:43,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@147bbc59 - End of configuration.
[testng] [2024-07-12 02:16:43,977] [pool-1-thread-10] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01:
[testng] 02:16:43,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:16:43,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:43,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-16-43.log]
[testng] 02:16:43,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51cfd1f6 - End of configuration.
[testng] [2024-07-12 02:16:43,997] [pool-1-thread-9] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01:
[testng] 02:16:43,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:16:43,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:43,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-16-43.log]
[testng] 02:16:43,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c1d8f1 - End of configuration.
[testng] [2024-07-12 02:16:44,038] [pool-1-thread-8] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01:
[testng] 02:16:44,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:16:44,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-16-44.log]
[testng] 02:16:44,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2580a8d6 - End of configuration.
[testng] [2024-07-12 02:16:44,343] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01:
[testng] 02:16:44,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:16:44,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-16-44.log]
[testng] 02:16:44,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d108ff - End of configuration.
[testng] [2024-07-12 02:16:44,360] [pool-1-thread-6] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB:
[testng] 02:16:44,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:16:44,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-16-44.log]
[testng] 02:16:44,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2717beef - End of configuration.
[testng] [2024-07-12 02:16:44,383] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01:
[testng] 02:16:44,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:16:44,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-16-44.log]
[testng] 02:16:44,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d42c481 - End of configuration.
[testng] [2024-07-12 02:16:44,547] [pool-1-thread-4] Initializing /data/omar/FB03f00o1.C01:
[testng] 02:16:44,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:16:44,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-16-44.log]
[testng] 02:16:44,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7587a381 - End of configuration.
[testng] [2024-07-12 02:16:44,566] [pool-1-thread-3] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB:
[testng] 02:16:44,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:16:44,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-16-44.log]
[testng] 02:16:44,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc2e647 - End of configuration.
[testng] [2024-07-12 02:16:44,583] [pool-1-thread-2] Initializing /data/omar/FB03f03o2.DIB:
[testng] 02:16:44,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:16:44,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:44,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-16-44.log]
[testng] 02:16:44,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678b7290 - End of configuration.
[testng] [2024-07-12 02:16:46,568] [pool-1-thread-6] Initializing /data/omar/FB03f00o2.C01:
[testng] [2024-07-12 02:16:46,584] [pool-1-thread-4] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB:
[testng] [2024-07-12 02:16:46,595] [pool-1-thread-2] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01:
[testng] [2024-07-12 02:16:46,633] [pool-1-thread-12] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01:
[testng] [2024-07-12 02:16:46,724] [pool-1-thread-9] Initializing /data/omar/FB03f00d1.C01:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 35 seconds
Finished: SUCCESS