Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
Started by upstream project "Trigger" build number 135
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15453294388567104773.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18467_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:24:49,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:24:49,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:24:49,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:24:49,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:24:49,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:24:49,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:24:49,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:24:49,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:24:49,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:24:49,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:24:49,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:24:49,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:24:49,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:24:49,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:24:49,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:24:49,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:24:49,655 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:24:49,655 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:24:49,655 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:24:49,656 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:24:49,656 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:24:49,657 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:24:49,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 358 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-12 02:24:49,668] [main] java.version = 1.8.0_342
[testng] 02:24:49,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:24:49,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:24:49,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-24-49.log]
[testng] 02:24:49,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-12 02:24:49,732] [main] testng.directory = /data
[testng] [2024-07-12 02:24:49,732] [main] testng.configDirectory = /config
[testng] [2024-07-12 02:24:49,746] [main] testng.multiplier = 1.0
[testng] [2024-07-12 02:24:49,746] [main] testng.in-memory = false
[testng] [2024-07-12 02:24:49,746] [main] testng.allow-missing = false
[testng] [2024-07-12 02:24:49,746] [main] user.language = en
[testng] [2024-07-12 02:24:49,746] [main] user.country = ${user.country}
[testng] [2024-07-12 02:24:49,746] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-12 02:29:59,212] [main] ----------------------------------------
[testng] [2024-07-12 02:29:59,212] [main] Total files: 2169
[testng] [2024-07-12 02:29:59,212] [main] Scan time: 309.465 s (142 ms/file)
[testng] [2024-07-12 02:29:59,213] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-12 02:46:59,912] [pool-1-thread-1] Initializing /data/juergen/Experiment/experiment_descriptor.xml:
[testng] 02:46:59,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:46:59,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:59,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-46-59.log]
[testng] 02:46:59,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc5d1c - End of configuration.
[testng] [2024-07-12 02:46:59,991] [pool-1-thread-12] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml:
[testng] 02:46:59,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:46:59,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:46:59,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-46-59.log]
[testng] 02:46:59,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21433d1c - End of configuration.
[testng] [2024-07-12 02:47:02,733] [pool-1-thread-11] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml:
[testng] 02:47:02,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:47:02,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:02,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-47-02.log]
[testng] 02:47:02,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6946694a - End of configuration.
[testng] [2024-07-12 02:47:03,013] [pool-1-thread-10] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml:
[testng] 02:47:03,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:47:03,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:03,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-47-03.log]
[testng] 02:47:03,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101a9eba - End of configuration.
[testng] [2024-07-12 02:47:03,177] [pool-1-thread-9] Initializing /data/ruben/plate_002/experiment_descriptor.xml:
[testng] 02:47:03,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:47:03,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:03,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-47-03.log]
[testng] 02:47:03,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c6fd7 - End of configuration.
[testng] [2024-07-12 02:47:03,257] [pool-1-thread-8] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml:
[testng] 02:47:03,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:47:03,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:03,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-47-03.log]
[testng] 02:47:03,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9765d74 - End of configuration.
[testng] [2024-07-12 02:47:24,962] [pool-1-thread-7] Initializing /data/embl/Maik_001/experiment_descriptor.xml:
[testng] 02:47:24,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:47:24,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:24,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-47-24.log]
[testng] 02:47:24,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a4a09d - End of configuration.
[testng] [2024-07-12 02:47:31,619] [pool-1-thread-6] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml:
[testng] 02:47:31,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:47:31,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:31,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-47-31.log]
[testng] 02:47:31,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dfffc8d - End of configuration.
[testng] [2024-07-12 02:47:32,541] [pool-1-thread-5] Initializing /data/gideon/experiment_descriptor.xml:
[testng] 02:47:32,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:47:32,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:32,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-47-32.log]
[testng] 02:47:32,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48b12a9b - End of configuration.
[testng] [2024-07-12 02:48:02,552] [pool-1-thread-4] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml:
[testng] 02:48:02,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:48:02,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:02,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-48-02.log]
[testng] 02:48:02,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cd2705 - End of configuration.
[testng] [2024-07-12 02:48:57,198] [pool-1-thread-3] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml:
[testng] 02:48:57,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:48:57,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:48:57,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-48-57.log]
[testng] 02:48:57,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@376b6ef8 - End of configuration.
[testng] [2024-07-12 02:49:15,837] [pool-1-thread-2] Initializing /data/ruben/20100827_004/experiment_descriptor.xml:
[testng] 02:49:15,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:49:15,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:49:15,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-49-15.log]
[testng] 02:49:15,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6201f154 - End of configuration.
[testng] [2024-07-12 02:49:22,144] [pool-1-thread-1] Initializing /data/nadine/experiment_descriptor.xml:
[testng] [2024-07-12 02:49:24,988] [pool-1-thread-1] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml:
[testng] [2024-07-12 02:49:35,916] [pool-1-thread-10] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml:
[testng] [2024-07-12 02:50:13,514] [pool-1-thread-7] Initializing /data/christian/example/experiment_descriptor.xml:
[testng] [2024-07-12 02:50:15,015] [pool-1-thread-7] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 minutes 33 seconds
Finished: SUCCESS