Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
 Started by upstream project "Trigger" build number 135
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11325297093204307508.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18484_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:39:05,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:39:05,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 02:39:05,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:39:05,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:39:05,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:39:05,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:39:05,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:39:05,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:39:05,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:39:05,126 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:39:05,126 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:39:05,126 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:39:05,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:39:05,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:39:05,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:39:05,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:39:05,383 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:39:05,383 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:39:05,383 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:39:05,384 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:39:05,384 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 02:39:05,385 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 02:39:05,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-12 02:39:05,394] [main] java.version = 1.8.0_342
   [testng] 02:39:05,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:39:05,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:05,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-39-05.log]
   [testng] 02:39:05,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-07-12 02:39:05,445] [main] testng.directory = /data
   [testng] [2024-07-12 02:39:05,446] [main] testng.configDirectory = /config
   [testng] [2024-07-12 02:39:05,458] [main] testng.multiplier = 1.0
   [testng] [2024-07-12 02:39:05,458] [main] testng.in-memory = false
   [testng] [2024-07-12 02:39:05,458] [main] testng.allow-missing = false
   [testng] [2024-07-12 02:39:05,458] [main] user.language = en
   [testng] [2024-07-12 02:39:05,458] [main] user.country = ${user.country}
   [testng] [2024-07-12 02:39:05,458] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-07-12 02:39:16,716] [main] ----------------------------------------
   [testng] [2024-07-12 02:39:16,716] [main] Total files: 944
   [testng] [2024-07-12 02:39:16,716] [main] Scan time: 11.257 s (11 ms/file)
   [testng] [2024-07-12 02:39:16,716] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-12 02:39:45,229] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 02:39:45,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:39:45,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-39-45.log]
   [testng] 02:39:45,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4014f4f0 - End of configuration.
   [testng] [2024-07-12 02:39:45,288] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 02:39:45,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:39:45,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-39-45.log]
   [testng] 02:39:45,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ec6df - End of configuration.
   [testng] [2024-07-12 02:39:45,320] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 02:39:45,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:39:45,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-39-45.log]
   [testng] 02:39:45,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33ead281 - End of configuration.
   [testng] [2024-07-12 02:39:45,347] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 02:39:45,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:39:45,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-39-45.log]
   [testng] 02:39:45,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1214f404 - End of configuration.
   [testng] [2024-07-12 02:39:45,394] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 02:39:45,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:39:45,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-39-45.log]
   [testng] 02:39:45,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dd36a4 - End of configuration.
   [testng] [2024-07-12 02:39:45,435] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 02:39:45,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:39:45,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-39-45.log]
   [testng] 02:39:45,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552aec55 - End of configuration.
   [testng] [2024-07-12 02:39:45,468] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 02:39:45,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:39:45,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-39-45.log]
   [testng] 02:39:45,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f696c7 - End of configuration.
   [testng] [2024-07-12 02:39:45,502] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 02:39:45,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:39:45,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-39-45.log]
   [testng] 02:39:45,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649fd666 - End of configuration.
   [testng] [2024-07-12 02:39:45,554] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif: 
   [testng] 02:39:45,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:39:45,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-39-45.log]
   [testng] 02:39:45,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d30d59f - End of configuration.
   [testng] [2024-07-12 02:39:45,592] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 02:39:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:39:45,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-39-45.log]
   [testng] 02:39:45,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40386025 - End of configuration.
   [testng] [2024-07-12 02:39:45,626] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 02:39:45,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:39:45,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-39-45.log]
   [testng] 02:39:45,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d66c123 - End of configuration.
   [testng] [2024-07-12 02:39:45,659] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 02:39:45,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:39:45,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:39:45,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-39-45.log]
   [testng] 02:39:45,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c4ba6e9 - End of configuration.
   [testng] [2024-07-12 02:39:47,141] [pool-1-thread-11] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] [2024-07-12 02:39:47,166] [pool-1-thread-10] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] [2024-07-12 02:39:52,266] [pool-1-thread-6] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 minutes 49 seconds
Finished: SUCCESS