Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
Started by upstream project "Trigger" build number 135
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins8889681519666865225.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18487_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:43:40,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:40,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:40,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:40,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:40,848 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:40,848 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:40,848 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:40,849 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:40,849 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:43:40,850 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:43:40,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 421 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-12 02:43:40,859] [main] java.version = 1.8.0_342
[testng] 02:43:40,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:40,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:40,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-43-40.log]
[testng] 02:43:40,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-12 02:43:40,925] [main] testng.directory = /data
[testng] [2024-07-12 02:43:40,925] [main] testng.configDirectory = /config
[testng] [2024-07-12 02:43:40,947] [main] testng.multiplier = 1.0
[testng] [2024-07-12 02:43:40,947] [main] testng.in-memory = false
[testng] [2024-07-12 02:43:40,947] [main] testng.allow-missing = false
[testng] [2024-07-12 02:43:40,948] [main] user.language = en
[testng] [2024-07-12 02:43:40,948] [main] user.country = ${user.country}
[testng] [2024-07-12 02:43:40,948] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-12 02:43:41,560] [main] ----------------------------------------
[testng] [2024-07-12 02:43:41,560] [main] Total files: 11
[testng] [2024-07-12 02:43:41,560] [main] Scan time: 0.612 s (55 ms/file)
[testng] [2024-07-12 02:43:41,561] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-12 02:43:43,113] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 02:43:43,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:43,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-43-43.log]
[testng] 02:43:43,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5291a4 - End of configuration.
[testng] [2024-07-12 02:43:43,245] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 02:43:43,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:43,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-43-43.log]
[testng] 02:43:43,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@561a9cd6 - End of configuration.
[testng] [2024-07-12 02:43:43,478] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 02:43:43,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:43,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-43-43.log]
[testng] 02:43:43,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ee7ac3b - End of configuration.
[testng] [2024-07-12 02:43:43,502] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 02:43:43,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:43,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-43-43.log]
[testng] 02:43:43,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5d2066 - End of configuration.
[testng] [2024-07-12 02:43:43,514] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 02:43:43,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:43,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-43-43.log]
[testng] 02:43:43,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55384415 - End of configuration.
[testng] [2024-07-12 02:43:43,573] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 02:43:43,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:43,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-43-43.log]
[testng] 02:43:43,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc668a1 - End of configuration.
[testng] [2024-07-12 02:43:43,590] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 02:43:43,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:43,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-43-43.log]
[testng] 02:43:43,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c0e8572 - End of configuration.
[testng] [2024-07-12 02:43:43,652] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 02:43:43,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:43,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-43-43.log]
[testng] 02:43:43,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277c7b21 - End of configuration.
[testng] [2024-07-12 02:43:43,711] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 02:43:43,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:43,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-43-43.log]
[testng] 02:43:43,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec3d5cd - End of configuration.
[testng] [2024-07-12 02:43:43,811] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 02:43:43,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:43,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-43-43.log]
[testng] 02:43:43,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be62691 - End of configuration.
[testng] [2024-07-12 02:43:43,889] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 02:43:43,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:43,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:43,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-43-43.log]
[testng] 02:43:43,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338fc051 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 18 seconds
Finished: SUCCESS