Started by upstream project "BIOFORMATS-test-repo" build number 2
originally caused by:
Started by upstream project "Trigger" build number 3
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins183646002682788496.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_185_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:33:05,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:33:05,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 00:33:05,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:33:05,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:33:05,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:33:05,286 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:33:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:33:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:33:05,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:33:05,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:33:05,589 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:33:05,589 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:33:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:33:05,590 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:33:05,590 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 00:33:05,592 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 00:33:05,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 307 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-15 00:33:05,603] [main] java.version = 1.8.0_342
[testng] 00:33:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:33:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:05,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_00-33-05.log]
[testng] 00:33:05,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-15 00:33:05,660] [main] testng.directory = /data
[testng] [2024-03-15 00:33:05,661] [main] testng.configDirectory = /config
[testng] [2024-03-15 00:33:05,675] [main] testng.multiplier = 1.0
[testng] [2024-03-15 00:33:05,675] [main] testng.in-memory = false
[testng] [2024-03-15 00:33:05,676] [main] testng.allow-missing = false
[testng] [2024-03-15 00:33:05,676] [main] user.language = en
[testng] [2024-03-15 00:33:05,676] [main] user.country = ${user.country}
[testng] [2024-03-15 00:33:05,676] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-15 00:33:06,102] [main] ----------------------------------------
[testng] [2024-03-15 00:33:06,103] [main] Total files: 25
[testng] [2024-03-15 00:33:06,103] [main] Scan time: 0.426 s (17 ms/file)
[testng] [2024-03-15 00:33:06,103] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-15 00:33:08,083] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT:
[testng] 00:33:08,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:33:08,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_00-33-08.log]
[testng] 00:33:08,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c3e1d52 - End of configuration.
[testng] [2024-03-15 00:33:08,132] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT:
[testng] 00:33:08,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:33:08,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_00-33-08.log]
[testng] 00:33:08,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fdfdb1 - End of configuration.
[testng] [2024-03-15 00:33:08,154] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 00:33:08,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:33:08,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_00-33-08.log]
[testng] 00:33:08,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207e1ac - End of configuration.
[testng] [2024-03-15 00:33:08,171] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 00:33:08,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:33:08,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_00-33-08.log]
[testng] 00:33:08,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22cbb6ac - End of configuration.
[testng] [2024-03-15 00:33:08,289] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 00:33:08,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:33:08,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_00-33-08.log]
[testng] 00:33:08,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15dab0b3 - End of configuration.
[testng] [2024-03-15 00:33:08,438] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict:
[testng] 00:33:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:33:08,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_00-33-08.log]
[testng] 00:33:08,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3168b5ad - End of configuration.
[testng] [2024-03-15 00:33:08,456] [pool-1-thread-7] Initializing /data/jqd/mire32.pict:
[testng] 00:33:08,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:33:08,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_00-33-08.log]
[testng] 00:33:08,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620644a8 - End of configuration.
[testng] [2024-03-15 00:33:08,483] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict:
[testng] 00:33:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:33:08,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_00-33-08.log]
[testng] 00:33:08,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eae0383 - End of configuration.
[testng] [2024-03-15 00:33:08,498] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 00:33:08,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:33:08,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_00-33-08.log]
[testng] 00:33:08,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d20114 - End of configuration.
[testng] [2024-03-15 00:33:08,568] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT:
[testng] 00:33:08,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:33:08,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_00-33-08.log]
[testng] 00:33:08,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f5303d - End of configuration.
[testng] [2024-03-15 00:33:08,610] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT:
[testng] 00:33:08,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:33:08,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_00-33-08.log]
[testng] 00:33:08,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292d6ffa - End of configuration.
[testng] [2024-03-15 00:33:08,651] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT:
[testng] 00:33:08,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:33:08,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:08,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_00-33-08.log]
[testng] 00:33:08,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1961b558 - End of configuration.
[testng] [2024-03-15 00:33:10,473] [pool-1-thread-6] Initializing /data/jqd/32bit.pict:
[testng] [2024-03-15 00:33:10,520] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-03-15 00:33:10,546] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] [2024-03-15 00:33:10,584] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-03-15 00:33:10,618] [pool-1-thread-12] Initializing /data/misc/planet.png:
[testng] [2024-03-15 00:33:10,633] [pool-1-thread-8] Initializing /data/misc/swlogo.pict:
[testng] [2024-03-15 00:33:10,886] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-03-15 00:33:10,916] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-03-15 00:33:11,029] [pool-1-thread-2] Initializing /data/misc/planet2.pict:
[testng] [2024-03-15 00:33:11,069] [pool-1-thread-3] Initializing /data/misc/planet.pict:
[testng] [2024-03-15 00:33:11,119] [pool-1-thread-1] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-03-15 00:33:11,329] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-03-15 00:33:11,887] [pool-1-thread-9] Initializing /data/brian/images/WHT.PCT:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS