Started by upstream project "BIOFORMATS-test-repo" build number 119
originally caused by:
 Started by upstream project "Trigger" build number 136
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8439495875427315576.sh
+ '[' cellh5 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18528_merge_ci -v /uod/idr/repos/curated/cellh5:/data -v /uod/idr-scratch/merge-ci/curated/cellh5:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:21:51,182 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:21:51,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:21:51,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:51,185 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:21:51,186 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:21:51,187 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:21:51,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:21:51,187 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:51,188 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:21:51,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:21:51,189 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:21:51,190 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:21:51,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:21:51,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:21:51,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:21:51,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:21:51,421 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:21:51,421 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:21:51,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:21:51,422 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:21:51,422 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:21:51,423 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:21:51,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 235 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-13 01:21:51,433] [main] java.version = 11.0.16
   [testng] 01:21:51,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:21:51,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:51,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-13_01-21-51.log]
   [testng] 01:21:51,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-13 01:21:51,492] [main] testng.directory = /data
   [testng] [2024-07-13 01:21:51,492] [main] testng.configDirectory = /config
   [testng] [2024-07-13 01:21:51,502] [main] testng.multiplier = 1.0
   [testng] [2024-07-13 01:21:51,504] [main] testng.in-memory = false
   [testng] [2024-07-13 01:21:51,504] [main] testng.allow-missing = false
   [testng] [2024-07-13 01:21:51,504] [main] user.language = en
   [testng] [2024-07-13 01:21:51,504] [main] user.country = ${user.country}
   [testng] [2024-07-13 01:21:51,504] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-13 01:21:51,883] [main] ----------------------------------------
   [testng] [2024-07-13 01:21:51,883] [main] Total files: 11
   [testng] [2024-07-13 01:21:51,884] [main] Scan time: 0.379 s (34 ms/file)
   [testng] [2024-07-13 01:21:51,884] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 10 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-13 01:27:19,746] [pool-1-thread-1] Initializing /data/public/idr0013/00001_01.ch5: 
   [testng] 01:27:19,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:27:19,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:19,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-13_01-27-19.log]
   [testng] 01:27:19,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d829c7d - End of configuration.
   [testng] [2024-07-13 01:27:19,825] [pool-1-thread-10] Initializing /data/public/samples/full/0042.ch5: 
   [testng] 01:27:19,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:27:19,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:19,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-13_01-27-19.log]
   [testng] 01:27:19,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e8a2e1 - End of configuration.
   [testng] [2024-07-13 01:27:19,937] [pool-1-thread-9] Initializing /data/public/samples/reduced/0038.ch5: 
   [testng] 01:27:19,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:27:19,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:19,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-13_01-27-19.log]
   [testng] 01:27:19,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33b572ee - End of configuration.
   [testng] [2024-07-13 01:27:20,146] [pool-1-thread-8] Initializing /data/public/samples/full/0046.ch5: 
   [testng] 01:27:20,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:27:20,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:20,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-13_01-27-20.log]
   [testng] 01:27:20,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5324d2eb - End of configuration.
   [testng] [2024-07-13 01:27:20,488] [pool-1-thread-7] Initializing /data/public/samples/full/0037.ch5: 
   [testng] 01:27:20,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:27:20,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:20,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-13_01-27-20.log]
   [testng] 01:27:20,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378a6cd8 - End of configuration.
   [testng] [2024-07-13 01:27:20,739] [pool-1-thread-6] Initializing /data/public/samples/full/0013.ch5: 
   [testng] 01:27:20,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:27:20,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:20,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-13_01-27-20.log]
   [testng] 01:27:20,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31975e7b - End of configuration.
   [testng] [2024-07-13 01:27:20,964] [pool-1-thread-5] Initializing /data/public/samples/full/0045.ch5: 
   [testng] 01:27:20,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:27:20,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:20,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-13_01-27-20.log]
   [testng] 01:27:20,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5219cfdb - End of configuration.
   [testng] [2024-07-13 01:27:21,246] [pool-1-thread-4] Initializing /data/public/samples/full/0041.ch5: 
   [testng] 01:27:21,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:27:21,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:21,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-13_01-27-21.log]
   [testng] 01:27:21,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56321411 - End of configuration.
   [testng] [2024-07-13 01:27:21,565] [pool-1-thread-3] Initializing /data/public/samples/full/0040.ch5: 
   [testng] 01:27:21,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:27:21,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:21,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-13_01-27-21.log]
   [testng] 01:27:21,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abdae61 - End of configuration.
   [testng] [2024-07-13 01:27:21,779] [pool-1-thread-2] Initializing /data/public/samples/full/0039.ch5: 
   [testng] 01:27:21,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:27:21,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:21,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-13_01-27-21.log]
   [testng] 01:27:21,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abb1b54 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 530, Failures: 0, Skips: 10
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 20 minutes 55 seconds
Finished: SUCCESS