Started by upstream project "BIOFORMATS-test-repo" build number 119
originally caused by:
Started by upstream project "Trigger" build number 136
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17870833623093690978.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18556_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:29:17,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:29:17,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 01:29:17,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:17,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:29:17,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:29:17,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:29:17,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:29:17,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:17,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:29:17,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:29:17,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:29:17,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:29:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:29:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:29:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:29:17,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:29:17,777 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:29:17,777 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:29:17,777 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:29:17,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:29:17,778 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 01:29:17,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 01:29:17,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 329 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-13 01:29:17,790] [main] java.version = 11.0.16
[testng] 01:29:17,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:29:17,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:17,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-13_01-29-17.log]
[testng] 01:29:17,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-13 01:29:17,854] [main] testng.directory = /data
[testng] [2024-07-13 01:29:17,854] [main] testng.configDirectory = /config
[testng] [2024-07-13 01:29:17,867] [main] testng.multiplier = 1.0
[testng] [2024-07-13 01:29:17,869] [main] testng.in-memory = false
[testng] [2024-07-13 01:29:17,869] [main] testng.allow-missing = false
[testng] [2024-07-13 01:29:17,869] [main] user.language = en
[testng] [2024-07-13 01:29:17,869] [main] user.country = ${user.country}
[testng] [2024-07-13 01:29:17,869] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-13 01:29:18,318] [main] ----------------------------------------
[testng] [2024-07-13 01:29:18,318] [main] Total files: 25
[testng] [2024-07-13 01:29:18,319] [main] Scan time: 0.449 s (17 ms/file)
[testng] [2024-07-13 01:29:18,319] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-13 01:29:20,509] [pool-1-thread-1] Initializing /data/misc/swlogo.pict:
[testng] 01:29:20,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:29:20,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-13_01-29-20.log]
[testng] 01:29:20,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18bf9d37 - End of configuration.
[testng] [2024-07-13 01:29:20,537] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:29:20,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:29:20,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-13_01-29-20.log]
[testng] 01:29:20,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e207fca - End of configuration.
[testng] [2024-07-13 01:29:20,550] [pool-1-thread-11] Initializing /data/misc/planet.png:
[testng] 01:29:20,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:29:20,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-13_01-29-20.log]
[testng] 01:29:20,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73acafcc - End of configuration.
[testng] [2024-07-13 01:29:20,559] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT:
[testng] 01:29:20,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:29:20,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-13_01-29-20.log]
[testng] 01:29:20,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276ca47d - End of configuration.
[testng] [2024-07-13 01:29:20,579] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:29:20,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:29:20,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-13_01-29-20.log]
[testng] 01:29:20,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30f7d56a - End of configuration.
[testng] [2024-07-13 01:29:20,700] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] 01:29:20,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:29:20,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-13_01-29-20.log]
[testng] 01:29:20,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@640e43e4 - End of configuration.
[testng] [2024-07-13 01:29:20,715] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT:
[testng] 01:29:20,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:29:20,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-13_01-29-20.log]
[testng] 01:29:20,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c2d8bc - End of configuration.
[testng] [2024-07-13 01:29:20,738] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT:
[testng] 01:29:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-13_01-29-20.log]
[testng] 01:29:20,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ebf4fd8 - End of configuration.
[testng] [2024-07-13 01:29:20,757] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT:
[testng] 01:29:20,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:20,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-13_01-29-20.log]
[testng] 01:29:20,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7257f10c - End of configuration.
[testng] [2024-07-13 01:29:20,793] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:29:20,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:20,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-13_01-29-20.log]
[testng] 01:29:20,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75650ac1 - End of configuration.
[testng] [2024-07-13 01:29:20,830] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] 01:29:20,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:20,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-13_01-29-20.log]
[testng] 01:29:20,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da90d93 - End of configuration.
[testng] [2024-07-13 01:29:20,880] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:29:20,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:20,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:20,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-13_01-29-20.log]
[testng] 01:29:20,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21425844 - End of configuration.
[testng] [2024-07-13 01:29:23,094] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-07-13 01:29:23,112] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] [2024-07-13 01:29:23,166] [pool-1-thread-1] Initializing /data/misc/planet.pict:
[testng] [2024-07-13 01:29:23,217] [pool-1-thread-4] Initializing /data/jqd/32bit.pict:
[testng] [2024-07-13 01:29:23,255] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct:
[testng] [2024-07-13 01:29:23,278] [pool-1-thread-6] Initializing /data/jqd/mire32.pict:
[testng] [2024-07-13 01:29:23,293] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT:
[testng] [2024-07-13 01:29:23,322] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] [2024-07-13 01:29:23,826] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-07-13 01:29:23,851] [pool-1-thread-11] Initializing /data/brian/images/VENUS.pct:
[testng] [2024-07-13 01:29:24,473] [pool-1-thread-3] Initializing /data/misc/planet2.pict:
[testng] [2024-07-13 01:29:24,501] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-07-13 01:29:24,515] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS