Started by upstream project "BIOFORMATS-test-repo" build number 119
originally caused by:
 Started by upstream project "Trigger" build number 136
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3112968348073007272.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18586_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:48:49,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:48:49,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:48:49,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:49,147 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:49,147 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:48:49,148 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:48:49,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:48:49,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:49,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:49,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:48:49,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:48:49,150 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:48:49,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:48:49,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:48:49,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:48:49,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:48:49,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:48:49,347 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:48:49,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:48:49,348 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:48:49,348 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:48:49,349 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:48:49,349 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-13 01:48:49,358] [main] java.version = 11.0.16
   [testng] 01:48:49,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:48:49,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:49,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-13_01-48-49.log]
   [testng] 01:48:49,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-13 01:48:49,408] [main] testng.directory = /data
   [testng] [2024-07-13 01:48:49,408] [main] testng.configDirectory = /config
   [testng] [2024-07-13 01:48:49,418] [main] testng.multiplier = 1.0
   [testng] [2024-07-13 01:48:49,419] [main] testng.in-memory = false
   [testng] [2024-07-13 01:48:49,419] [main] testng.allow-missing = false
   [testng] [2024-07-13 01:48:49,420] [main] user.language = en
   [testng] [2024-07-13 01:48:49,420] [main] user.country = ${user.country}
   [testng] [2024-07-13 01:48:49,420] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-13 01:48:50,043] [main] ----------------------------------------
   [testng] [2024-07-13 01:48:50,043] [main] Total files: 16
   [testng] [2024-07-13 01:48:50,043] [main] Scan time: 0.623 s (38 ms/file)
   [testng] [2024-07-13 01:48:50,044] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-13 01:49:00,253] [pool-1-thread-1] Initializing /data/samples/5371.afi: 
   [testng] 01:49:00,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:49:00,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-13_01-49-00.log]
   [testng] 01:49:00,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1183a104 - End of configuration.
   [testng] [2024-07-13 01:49:00,338] [pool-1-thread-12] Initializing /data/samples/5440.afi: 
   [testng] 01:49:00,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:49:00,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-13_01-49-00.log]
   [testng] 01:49:00,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8a6ddc - End of configuration.
   [testng] [2024-07-13 01:49:00,495] [pool-1-thread-11] Initializing /data/samples/5358.afi: 
   [testng] 01:49:00,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:49:00,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-13_01-49-00.log]
   [testng] 01:49:00,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@750a5ab1 - End of configuration.
   [testng] [2024-07-13 01:49:00,590] [pool-1-thread-10] Initializing /data/samples/5339.afi: 
   [testng] 01:49:00,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:49:00,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-13_01-49-00.log]
   [testng] 01:49:00,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5a3620 - End of configuration.
   [testng] [2024-07-13 01:49:00,667] [pool-1-thread-9] Initializing /data/samples/5306.afi: 
   [testng] 01:49:00,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:49:00,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-13_01-49-00.log]
   [testng] 01:49:00,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62391aaa - End of configuration.
   [testng] [2024-07-13 01:49:00,737] [pool-1-thread-8] Initializing /data/samples/5414.afi: 
   [testng] 01:49:00,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:49:00,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-13_01-49-00.log]
   [testng] 01:49:00,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53c85409 - End of configuration.
   [testng] [2024-07-13 01:49:00,801] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:49:00,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:49:00,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-13_01-49-00.log]
   [testng] 01:49:00,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7378b10 - End of configuration.
   [testng] [2024-07-13 01:49:00,974] [pool-1-thread-6] Initializing /data/samples/5407.afi: 
   [testng] 01:49:00,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:49:00,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:00,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-13_01-49-00.log]
   [testng] 01:49:00,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e8e3837 - End of configuration.
   [testng] [2024-07-13 01:49:01,063] [pool-1-thread-5] Initializing /data/samples/5383.afi: 
   [testng] 01:49:01,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:49:01,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:01,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-13_01-49-01.log]
   [testng] 01:49:01,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb1de71 - End of configuration.
   [testng] [2024-07-13 01:49:01,133] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:49:01,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:49:01,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:01,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-13_01-49-01.log]
   [testng] 01:49:01,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc56c92 - End of configuration.
   [testng] [2024-07-13 01:49:01,237] [pool-1-thread-3] Initializing /data/samples/5347.afi: 
   [testng] 01:49:01,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:49:01,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:01,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-13_01-49-01.log]
   [testng] 01:49:01,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21b6b058 - End of configuration.
   [testng] [2024-07-13 01:49:01,315] [pool-1-thread-2] Initializing /data/samples/5351.afi: 
   [testng] 01:49:01,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:49:01,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:01,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-13_01-49-01.log]
   [testng] 01:49:01,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66451f6b - End of configuration.
   [testng] [2024-07-13 01:49:48,990] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] [2024-07-13 01:49:52,780] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] [2024-07-13 01:49:54,046] [pool-1-thread-11] Initializing /data/samples/5365.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 58 seconds
Finished: SUCCESS