Started by upstream project "BIOFORMATS-test-repo" build number 120
originally caused by:
Started by upstream project "Trigger" build number 137
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins10779272276776160094.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18707_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:26:06,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:26:06,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:26:06,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:06,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:26:06,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:26:06,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:26:06,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:26:06,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:06,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:26:06,210 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:26:06,210 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:26:06,210 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:26:06,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:26:06,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:26:06,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:26:06,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:26:06,409 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:26:06,409 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:26:06,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:26:06,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:26:06,409 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:26:06,410 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:26:06,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-14 01:26:06,419] [main] java.version = 17.0.2
[testng] 01:26:06,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:26:06,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:06,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-14_01-26-06.log]
[testng] 01:26:06,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-14 01:26:06,467] [main] testng.directory = /data
[testng] [2024-07-14 01:26:06,467] [main] testng.configDirectory = /config
[testng] [2024-07-14 01:26:06,475] [main] testng.multiplier = 1.0
[testng] [2024-07-14 01:26:06,476] [main] testng.in-memory = false
[testng] [2024-07-14 01:26:06,476] [main] testng.allow-missing = false
[testng] [2024-07-14 01:26:06,476] [main] user.language = en
[testng] [2024-07-14 01:26:06,477] [main] user.country = ${user.country}
[testng] [2024-07-14 01:26:06,477] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-14 01:26:06,813] [main] ----------------------------------------
[testng] [2024-07-14 01:26:06,814] [main] Total files: 21
[testng] [2024-07-14 01:26:06,814] [main] Scan time: 0.336 s (16 ms/file)
[testng] [2024-07-14 01:26:06,814] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-14 01:26:07,604] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA:
[testng] 01:26:07,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:07,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-14_01-26-07.log]
[testng] 01:26:07,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f18fba1 - End of configuration.
[testng] [2024-07-14 01:26:07,622] [pool-1-thread-12] Initializing /data/samples/CTC24.TGA:
[testng] 01:26:07,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:26:07,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-14_01-26-07.log]
[testng] 01:26:07,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a54b9bf - End of configuration.
[testng] [2024-07-14 01:26:07,676] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA:
[testng] 01:26:07,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:26:07,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-14_01-26-07.log]
[testng] 01:26:07,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af0d8b6 - End of configuration.
[testng] [2024-07-14 01:26:07,687] [pool-1-thread-10] Initializing /data/samples/FLAG_B16.TGA:
[testng] 01:26:07,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:26:07,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-14_01-26-07.log]
[testng] 01:26:07,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386870bb - End of configuration.
[testng] [2024-07-14 01:26:07,700] [pool-1-thread-9] Initializing /data/samples/XING_T16.TGA:
[testng] 01:26:07,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:26:07,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-14_01-26-07.log]
[testng] 01:26:07,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d67eb11 - End of configuration.
[testng] [2024-07-14 01:26:07,713] [pool-1-thread-8] Initializing /data/samples/UBW8.TGA:
[testng] 01:26:07,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:26:07,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-14_01-26-07.log]
[testng] 01:26:07,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71390107 - End of configuration.
[testng] [2024-07-14 01:26:07,725] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA:
[testng] 01:26:07,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:26:07,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-14_01-26-07.log]
[testng] 01:26:07,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@881d484 - End of configuration.
[testng] [2024-07-14 01:26:07,748] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA:
[testng] 01:26:07,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:26:07,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-14_01-26-07.log]
[testng] 01:26:07,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22034798 - End of configuration.
[testng] [2024-07-14 01:26:07,761] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA:
[testng] 01:26:07,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:26:07,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-14_01-26-07.log]
[testng] 01:26:07,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fdce4b4 - End of configuration.
[testng] [2024-07-14 01:26:07,772] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA:
[testng] 01:26:07,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:26:07,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-14_01-26-07.log]
[testng] 01:26:07,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6732c003 - End of configuration.
[testng] [2024-07-14 01:26:07,782] [pool-1-thread-3] Initializing /data/samples/XING_B32.TGA:
[testng] 01:26:07,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:26:07,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-14_01-26-07.log]
[testng] 01:26:07,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31caf268 - End of configuration.
[testng] [2024-07-14 01:26:07,803] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA:
[testng] 01:26:07,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:26:07,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:07,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-14_01-26-07.log]
[testng] 01:26:07,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c94bd5 - End of configuration.
[testng] [2024-07-14 01:26:09,356] [pool-1-thread-11] Initializing /data/samples/CBW8.TGA:
[testng] [2024-07-14 01:26:09,365] [pool-1-thread-10] Initializing /data/samples/UTC24.TGA:
[testng] [2024-07-14 01:26:09,374] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA:
[testng] [2024-07-14 01:26:09,383] [pool-1-thread-6] Initializing /data/samples/FLAG_B32.TGA:
[testng] [2024-07-14 01:26:09,391] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-07-14 01:26:09,399] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-07-14 01:26:09,406] [pool-1-thread-9] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-07-14 01:26:09,414] [pool-1-thread-3] Initializing /data/samples/FLAG_T16.TGA:
[testng] [2024-07-14 01:26:09,421] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS