Started by upstream project "BIOFORMATS-test-repo" build number 120
originally caused by:
 Started by upstream project "Trigger" build number 137
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18151096982153529716.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18827_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:44:54,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:44:54,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 02:44:54,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:54,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:44:54,033 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:44:54,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:44:54,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:44:54,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:54,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:44:54,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:44:54,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:44:54,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:44:54,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:44:54,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:44:54,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:44:54,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:44:54,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:44:54,271 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:44:54,271 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:44:54,271 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:44:54,271 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 02:44:54,272 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 02:44:54,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 237 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-14 02:44:54,285] [main] java.version = 17.0.2
   [testng] 02:44:54,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:44:54,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:44:54,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-14_02-44-54.log]
   [testng] 02:44:54,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-14 02:44:54,355] [main] testng.directory = /data
   [testng] [2024-07-14 02:44:54,355] [main] testng.configDirectory = /config
   [testng] [2024-07-14 02:44:54,366] [main] testng.multiplier = 1.0
   [testng] [2024-07-14 02:44:54,367] [main] testng.in-memory = false
   [testng] [2024-07-14 02:44:54,368] [main] testng.allow-missing = false
   [testng] [2024-07-14 02:44:54,368] [main] user.language = en
   [testng] [2024-07-14 02:44:54,368] [main] user.country = ${user.country}
   [testng] [2024-07-14 02:44:54,368] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-14 02:44:55,658] [main] ----------------------------------------
   [testng] [2024-07-14 02:44:55,658] [main] Total files: 22
   [testng] [2024-07-14 02:44:55,659] [main] Scan time: 1.29 s (58 ms/file)
   [testng] [2024-07-14 02:44:55,659] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-14 02:45:04,048] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: 
   [testng] 02:45:04,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:45:04,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-14_02-45-04.log]
   [testng] 02:45:04,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6525ad - End of configuration.
   [testng] [2024-07-14 02:45:04,309] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: 
   [testng] 02:45:04,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:45:04,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-14_02-45-04.log]
   [testng] 02:45:04,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16350833 - End of configuration.
   [testng] [2024-07-14 02:45:04,343] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: 
   [testng] 02:45:04,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:45:04,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-14_02-45-04.log]
   [testng] 02:45:04,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d003eef - End of configuration.
   [testng] [2024-07-14 02:45:04,381] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq: 
   [testng] 02:45:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:45:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-14_02-45-04.log]
   [testng] 02:45:04,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c1471c - End of configuration.
   [testng] [2024-07-14 02:45:04,484] [pool-1-thread-9] Initializing /data/converted/dub01.ipw: 
   [testng] 02:45:04,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:45:04,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-14_02-45-04.log]
   [testng] 02:45:04,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2239aa73 - End of configuration.
   [testng] [2024-07-14 02:45:04,526] [pool-1-thread-8] Initializing /data/converted/clown.ipw: 
   [testng] 02:45:04,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:45:04,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-14_02-45-04.log]
   [testng] 02:45:04,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d90057d - End of configuration.
   [testng] [2024-07-14 02:45:04,544] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.seq: 
   [testng] 02:45:04,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:45:04,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-14_02-45-04.log]
   [testng] 02:45:04,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c9bd09c - End of configuration.
   [testng] [2024-07-14 02:45:04,583] [pool-1-thread-6] Initializing /data/converted/clown8c.seq: 
   [testng] 02:45:04,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:45:04,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-14_02-45-04.log]
   [testng] 02:45:04,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a15d4a - End of configuration.
   [testng] [2024-07-14 02:45:04,598] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: 
   [testng] 02:45:04,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:45:04,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-14_02-45-04.log]
   [testng] 02:45:04,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438f6061 - End of configuration.
   [testng] [2024-07-14 02:45:04,649] [pool-1-thread-4] Initializing /data/converted/clown.tif: 
   [testng] 02:45:04,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:45:04,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-14_02-45-04.log]
   [testng] 02:45:04,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d808a3 - End of configuration.
   [testng] [2024-07-14 02:45:04,667] [pool-1-thread-3] Initializing /data/converted/clown.seq: 
   [testng] 02:45:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:45:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-14_02-45-04.log]
   [testng] 02:45:04,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c90a0bb - End of configuration.
   [testng] [2024-07-14 02:45:04,686] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: 
   [testng] 02:45:04,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:45:04,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:45:04,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-14_02-45-04.log]
   [testng] 02:45:04,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6281fdeb - End of configuration.
   [testng] [2024-07-14 02:45:07,936] [pool-1-thread-2] Initializing /data/converted/dub01.seq: 
   [testng] [2024-07-14 02:45:07,966] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: 
   [testng] [2024-07-14 02:45:07,988] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.tiff: 
   [testng] [2024-07-14 02:45:08,046] [pool-1-thread-12] Initializing /data/samples/FLDUAL.TIF: 
   [testng] [2024-07-14 02:45:08,081] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: 
   [testng] [2024-07-14 02:45:08,094] [pool-1-thread-6] Initializing /data/converted/dub01.pic: 
   [testng] [2024-07-14 02:45:08,119] [pool-1-thread-4] Initializing /data/converted/clown8c.ipw: 
   [testng] [2024-07-14 02:45:08,128] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips: 
   [testng] [2024-07-14 02:45:08,146] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS