Started by upstream project "BIOFORMATS-test-repo" build number 121 originally caused by: Started by upstream project "Trigger" build number 138 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5824562669601661509.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_18860_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:15,350 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:25:15,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:25:15,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:15,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:15,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:25:15,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:25:15,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:25:15,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:15,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:15,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:25:15,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:15,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:15,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:15,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:15,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:15,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:15,638 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:15,638 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:15,638 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:15,639 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:15,639 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:25:15,640 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:25:15,640 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-15 01:25:15,654] [main] java.version = 1.8.0_342 [testng] 01:25:15,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:15,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:15,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_01-25-15.log] [testng] 01:25:15,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-15 01:25:15,725] [main] testng.directory = /data [testng] [2024-07-15 01:25:15,725] [main] testng.configDirectory = /config [testng] [2024-07-15 01:25:15,741] [main] testng.multiplier = 1.0 [testng] [2024-07-15 01:25:15,741] [main] testng.in-memory = false [testng] [2024-07-15 01:25:15,741] [main] testng.allow-missing = false [testng] [2024-07-15 01:25:15,741] [main] user.language = fr [testng] [2024-07-15 01:25:15,741] [main] user.country = FR [testng] [2024-07-15 01:25:15,742] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-15 01:25:27,254] [main] ---------------------------------------- [testng] [2024-07-15 01:25:27,254] [main] Total files: 226 [testng] [2024-07-15 01:25:27,255] [main] Scan time: 11.512 s (50 ms/file) [testng] [2024-07-15 01:25:27,255] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-15 01:25:35,906] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:25:35,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:35,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:35,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_01-25-35.log] [testng] 01:25:35,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408e018f - End of configuration. [testng] [2024-07-15 01:25:35,968] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:25:35,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:35,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:35,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_01-25-35.log] [testng] 01:25:35,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d64eb45 - End of configuration. [testng] [2024-07-15 01:25:35,980] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:25:35,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:35,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:35,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_01-25-35.log] [testng] 01:25:36,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143905c7 - End of configuration. [testng] [2024-07-15 01:25:36,009] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:25:36,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:36,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_01-25-36.log] [testng] 01:25:36,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d0280d - End of configuration. [testng] [2024-07-15 01:25:36,017] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:25:36,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:36,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_01-25-36.log] [testng] 01:25:36,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57586d8a - End of configuration. [testng] [2024-07-15 01:25:36,054] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:25:36,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:36,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_01-25-36.log] [testng] 01:25:36,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d8b8195 - End of configuration. [testng] [2024-07-15 01:25:36,087] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:25:36,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:36,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_01-25-36.log] [testng] 01:25:36,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@170b84df - End of configuration. [testng] [2024-07-15 01:25:36,110] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:25:36,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:36,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_01-25-36.log] [testng] 01:25:36,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb5497c - End of configuration. [testng] [2024-07-15 01:25:36,122] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:25:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:36,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_01-25-36.log] [testng] 01:25:36,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d292005 - End of configuration. [testng] [2024-07-15 01:25:36,194] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:25:36,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:36,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_01-25-36.log] [testng] 01:25:36,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d6e9a6 - End of configuration. [testng] [2024-07-15 01:25:36,204] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:25:36,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:36,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_01-25-36.log] [testng] 01:25:36,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7be0e1e4 - End of configuration. [testng] [2024-07-15 01:25:36,211] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:25:36,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:36,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:36,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_01-25-36.log] [testng] 01:25:36,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34a4e2ba - End of configuration. [testng] [2024-07-15 01:25:38,054] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-07-15 01:25:38,113] [pool-1-thread-3] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-07-15 01:25:38,133] [pool-1-thread-10] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-07-15 01:25:38,147] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-07-15 01:25:38,192] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-07-15 01:25:38,272] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-07-15 01:25:38,281] [pool-1-thread-2] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-07-15 01:25:38,291] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-07-15 01:25:38,308] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-07-15 01:25:38,320] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-07-15 01:25:38,390] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-07-15 01:25:38,670] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-07-15 01:25:38,883] [pool-1-thread-2] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-07-15 01:25:38,966] [pool-1-thread-9] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-07-15 01:25:39,030] [pool-1-thread-7] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-07-15 01:25:39,119] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS