Started by upstream project "BIOFORMATS-test-repo" build number 121
originally caused by:
 Started by upstream project "Trigger" build number 138
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4883471055765705150.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18893_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:33:34,753 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:33:34,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:33:34,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:34,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:34,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:33:34,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:33:34,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:33:34,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:34,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:34,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:33:34,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:33:34,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:33:34,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:33:34,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:33:35,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:33:35,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:33:35,022 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:33:35,022 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:33:35,022 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:33:35,023 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:33:35,023 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:33:35,023 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:33:35,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-15 01:33:35,033] [main] java.version = 1.8.0_342
   [testng] 01:33:35,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:33:35,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_01-33-35.log]
   [testng] 01:33:35,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-07-15 01:33:35,090] [main] testng.directory = /data
   [testng] [2024-07-15 01:33:35,090] [main] testng.configDirectory = /config
   [testng] [2024-07-15 01:33:35,102] [main] testng.multiplier = 1.0
   [testng] [2024-07-15 01:33:35,102] [main] testng.in-memory = false
   [testng] [2024-07-15 01:33:35,102] [main] testng.allow-missing = false
   [testng] [2024-07-15 01:33:35,102] [main] user.language = fr
   [testng] [2024-07-15 01:33:35,102] [main] user.country = FR
   [testng] [2024-07-15 01:33:35,102] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-07-15 01:33:36,379] [main] ----------------------------------------
   [testng] [2024-07-15 01:33:36,379] [main] Total files: 20
   [testng] [2024-07-15 01:33:36,379] [main] Scan time: 1.277 s (63 ms/file)
   [testng] [2024-07-15 01:33:36,379] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-15 01:33:36,979] [pool-1-thread-1] Initializing /data/ascb/c191.st: 
   [testng] 01:33:36,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:33:36,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:36,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_01-33-36.log]
   [testng] 01:33:36,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16474966 - End of configuration.
   [testng] [2024-07-15 01:33:37,001] [pool-1-thread-12] Initializing /data/dan/one.mrc: 
   [testng] 01:33:37,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:33:37,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_01-33-37.log]
   [testng] 01:33:37,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1618d605 - End of configuration.
   [testng] [2024-07-15 01:33:37,017] [pool-1-thread-11] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 01:33:37,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:33:37,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_01-33-37.log]
   [testng] 01:33:37,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@298b11dd - End of configuration.
   [testng] [2024-07-15 01:33:37,032] [pool-1-thread-10] Initializing /data/ascb/c191ali.mrc: 
   [testng] 01:33:37,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:33:37,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_01-33-37.log]
   [testng] 01:33:37,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b5285c - End of configuration.
   [testng] [2024-07-15 01:33:37,046] [pool-1-thread-9] Initializing /data/strand/Series1_A.mrc: 
   [testng] 01:33:37,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:33:37,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_01-33-37.log]
   [testng] 01:33:37,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc6efe6 - End of configuration.
   [testng] [2024-07-15 01:33:37,059] [pool-1-thread-8] Initializing /data/dan/two.mrc: 
   [testng] 01:33:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:33:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_01-33-37.log]
   [testng] 01:33:37,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6843df60 - End of configuration.
   [testng] [2024-07-15 01:33:37,077] [pool-1-thread-7] Initializing /data/samples/golgi.mrc: 
   [testng] 01:33:37,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:33:37,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_01-33-37.log]
   [testng] 01:33:37,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266733e - End of configuration.
   [testng] [2024-07-15 01:33:37,095] [pool-1-thread-6] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] 01:33:37,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:33:37,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_01-33-37.log]
   [testng] 01:33:37,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394ae44e - End of configuration.
   [testng] [2024-07-15 01:33:37,113] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 01:33:37,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:33:37,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_01-33-37.log]
   [testng] 01:33:37,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9625fc - End of configuration.
   [testng] [2024-07-15 01:33:37,134] [pool-1-thread-4] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 01:33:37,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:33:37,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_01-33-37.log]
   [testng] 01:33:37,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47109be6 - End of configuration.
   [testng] [2024-07-15 01:33:37,192] [pool-1-thread-3] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 01:33:37,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:33:37,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_01-33-37.log]
   [testng] 01:33:37,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5718b32 - End of configuration.
   [testng] [2024-07-15 01:33:37,225] [pool-1-thread-2] Initializing /data/ascb/514_9903.mrc: 
   [testng] 01:33:37,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:33:37,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:37,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_01-33-37.log]
   [testng] 01:33:37,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10857d79 - End of configuration.
   [testng] [2024-07-15 01:33:38,945] [pool-1-thread-11] Initializing /data/dan/three.mrc: 
   [testng] [2024-07-15 01:33:38,955] [pool-1-thread-3] Initializing /data/jcb/thylakoid5.rec: 
   [testng] [2024-07-15 01:33:38,964] [pool-1-thread-7] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] [2024-07-15 01:33:38,974] [pool-1-thread-5] Initializing /data/ascb/cfa1071.mrc: 
   [testng] [2024-07-15 01:33:39,119] [pool-1-thread-10] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] [2024-07-15 01:33:39,137] [pool-1-thread-1] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] [2024-07-15 01:33:39,759] [pool-1-thread-12] Initializing /data/samples/1160.mrc: 
   [testng] [2024-07-15 01:33:39,774] [pool-1-thread-10] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS