Started by upstream project "BIOFORMATS-test-repo" build number 121
originally caused by:
Started by upstream project "Trigger" build number 138
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13041694130983270967.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18988_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:43:31,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:43:31,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:43:31,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:31,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:31,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:43:31,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:43:31,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:43:31,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:31,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:31,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:43:31,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:43:31,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:43:32,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:32,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:32,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:32,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:32,162 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:32,162 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:32,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:32,163 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:32,163 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:43:32,164 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:43:32,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-15 02:43:32,173] [main] java.version = 1.8.0_342
[testng] 02:43:32,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:32,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:32,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_02-43-32.log]
[testng] 02:43:32,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-15 02:43:32,226] [main] testng.directory = /data
[testng] [2024-07-15 02:43:32,226] [main] testng.configDirectory = /config
[testng] [2024-07-15 02:43:32,239] [main] testng.multiplier = 1.0
[testng] [2024-07-15 02:43:32,239] [main] testng.in-memory = false
[testng] [2024-07-15 02:43:32,239] [main] testng.allow-missing = false
[testng] [2024-07-15 02:43:32,239] [main] user.language = fr
[testng] [2024-07-15 02:43:32,239] [main] user.country = FR
[testng] [2024-07-15 02:43:32,239] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-15 02:43:33,181] [main] ----------------------------------------
[testng] [2024-07-15 02:43:33,181] [main] Total files: 17
[testng] [2024-07-15 02:43:33,181] [main] Scan time: 0.942 s (55 ms/file)
[testng] [2024-07-15 02:43:33,181] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-15 02:43:34,369] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 02:43:34,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:34,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_02-43-34.log]
[testng] 02:43:34,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42f76818 - End of configuration.
[testng] [2024-07-15 02:43:34,396] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 02:43:34,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:43:34,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_02-43-34.log]
[testng] 02:43:34,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409cd456 - End of configuration.
[testng] [2024-07-15 02:43:34,410] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 02:43:34,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:34,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_02-43-34.log]
[testng] 02:43:34,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d3244b - End of configuration.
[testng] [2024-07-15 02:43:34,429] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 02:43:34,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:34,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_02-43-34.log]
[testng] 02:43:34,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46471ce1 - End of configuration.
[testng] [2024-07-15 02:43:34,442] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 02:43:34,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:34,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_02-43-34.log]
[testng] 02:43:34,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59838a9a - End of configuration.
[testng] [2024-07-15 02:43:34,481] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 02:43:34,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:34,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_02-43-34.log]
[testng] 02:43:34,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ee1e4c - End of configuration.
[testng] [2024-07-15 02:43:34,501] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 02:43:34,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:34,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_02-43-34.log]
[testng] 02:43:34,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f9603c5 - End of configuration.
[testng] [2024-07-15 02:43:34,513] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 02:43:34,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:34,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_02-43-34.log]
[testng] 02:43:34,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482bf30f - End of configuration.
[testng] [2024-07-15 02:43:34,532] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 02:43:34,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:34,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_02-43-34.log]
[testng] 02:43:34,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7bee9 - End of configuration.
[testng] [2024-07-15 02:43:34,548] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 02:43:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:34,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_02-43-34.log]
[testng] 02:43:34,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration.
[testng] [2024-07-15 02:43:34,569] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 02:43:34,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:34,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_02-43-34.log]
[testng] 02:43:34,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788fc68 - End of configuration.
[testng] [2024-07-15 02:43:34,585] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 02:43:34,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:34,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:34,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_02-43-34.log]
[testng] 02:43:34,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a603d2f - End of configuration.
[testng] [2024-07-15 02:43:36,189] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] [2024-07-15 02:43:36,207] [pool-1-thread-1] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] [2024-07-15 02:43:36,218] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] [2024-07-15 02:43:36,249] [pool-1-thread-8] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-07-15 02:43:36,264] [pool-1-thread-9] Initializing /data/samples/16bit 320x256x1.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS