Started by upstream project "BIOFORMATS-test-repo" build number 121 originally caused by: Started by upstream project "Trigger" build number 138 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10533071011499089030.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_18991_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:44:08,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:44:08,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:44:08,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:08,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:44:08,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:44:08,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:44:08,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:44:08,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:08,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:44:08,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:44:08,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:44:08,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:44:08,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:44:08,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:44:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:44:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:44:08,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:44:08,382 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:44:08,382 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:44:08,383 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:44:08,383 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:44:08,384 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:44:08,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 356 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-15 02:44:08,396] [main] java.version = 1.8.0_342 [testng] 02:44:08,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:44:08,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:08,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_02-44-08.log] [testng] 02:44:08,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-15 02:44:08,467] [main] testng.directory = /data [testng] [2024-07-15 02:44:08,468] [main] testng.configDirectory = /config [testng] [2024-07-15 02:44:08,484] [main] testng.multiplier = 1.0 [testng] [2024-07-15 02:44:08,485] [main] testng.in-memory = false [testng] [2024-07-15 02:44:08,485] [main] testng.allow-missing = false [testng] [2024-07-15 02:44:08,485] [main] user.language = fr [testng] [2024-07-15 02:44:08,485] [main] user.country = FR [testng] [2024-07-15 02:44:08,485] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-15 02:44:09,841] [main] ---------------------------------------- [testng] [2024-07-15 02:44:09,841] [main] Total files: 22 [testng] [2024-07-15 02:44:09,841] [main] Scan time: 1.356 s (61 ms/file) [testng] [2024-07-15 02:44:09,841] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-15 02:44:17,459] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] 02:44:17,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:44:17,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_02-44-17.log] [testng] 02:44:17,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6273ae5e - End of configuration. [testng] [2024-07-15 02:44:17,488] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:44:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:44:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_02-44-17.log] [testng] 02:44:17,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104a7b68 - End of configuration. [testng] [2024-07-15 02:44:17,524] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] 02:44:17,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:44:17,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_02-44-17.log] [testng] 02:44:17,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c00b - End of configuration. [testng] [2024-07-15 02:44:17,645] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] 02:44:17,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:44:17,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_02-44-17.log] [testng] 02:44:17,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab29c52 - End of configuration. [testng] [2024-07-15 02:44:17,662] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: [testng] 02:44:17,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:44:17,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_02-44-17.log] [testng] 02:44:17,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d0bf9 - End of configuration. [testng] [2024-07-15 02:44:17,676] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 02:44:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:44:17,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_02-44-17.log] [testng] 02:44:17,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe94302 - End of configuration. [testng] [2024-07-15 02:44:17,752] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] 02:44:17,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:44:17,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_02-44-17.log] [testng] 02:44:17,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f8ea85 - End of configuration. [testng] [2024-07-15 02:44:17,773] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 02:44:17,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:44:17,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_02-44-17.log] [testng] 02:44:17,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c1c624a - End of configuration. [testng] [2024-07-15 02:44:17,809] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:44:17,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:44:17,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_02-44-17.log] [testng] 02:44:17,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6ddfa3 - End of configuration. [testng] [2024-07-15 02:44:17,850] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] 02:44:17,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:44:17,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:17,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_02-44-17.log] [testng] 02:44:17,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385ee0d8 - End of configuration. [testng] [2024-07-15 02:44:18,028] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] 02:44:18,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:44:18,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:18,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_02-44-18.log] [testng] 02:44:18,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f2e4797 - End of configuration. [testng] [2024-07-15 02:44:18,046] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 02:44:18,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:44:18,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:44:18,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_02-44-18.log] [testng] 02:44:18,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607ace56 - End of configuration. [testng] [2024-07-15 02:44:20,127] [pool-1-thread-10] Initializing /data/converted/dub01.pic: [testng] [2024-07-15 02:44:20,162] [pool-1-thread-1] Initializing /data/converted/clown.tif: [testng] [2024-07-15 02:44:20,183] [pool-1-thread-7] Initializing /data/converted/clown.ipw: [testng] [2024-07-15 02:44:20,199] [pool-1-thread-3] Initializing /data/samples/HEART.SEQ: [testng] [2024-07-15 02:44:20,228] [pool-1-thread-2] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-07-15 02:44:20,263] [pool-1-thread-6] Initializing /data/converted/clown8c.tif: [testng] [2024-07-15 02:44:20,287] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] [2024-07-15 02:44:20,447] [pool-1-thread-12] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-07-15 02:44:20,672] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS