Started by upstream project "BIOFORMATS-test-repo" build number 122
originally caused by:
 Started by upstream project "Trigger" build number 139
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins13307541795213530433.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19083_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:59:35,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:59:35,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:59:35,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:59:35,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:59:35,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:59:35,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:59:35,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:59:35,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:59:35,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:59:35,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:59:35,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:59:35,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:59:35,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:59:35,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:59:35,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:59:35,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:59:35,998 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:59:35,999 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:59:35,999 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:59:35,999 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:59:35,999 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:59:36,000 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:59:36,001 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 323 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-16 01:59:36,014] [main] java.version = 11.0.16
   [testng] 01:59:36,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:59:36,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:59:36,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_01-59-36.log]
   [testng] 01:59:36,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-16 01:59:36,103] [main] testng.directory = /data
   [testng] [2024-07-16 01:59:36,103] [main] testng.configDirectory = /config
   [testng] [2024-07-16 01:59:36,117] [main] testng.multiplier = 1.0
   [testng] [2024-07-16 01:59:36,119] [main] testng.in-memory = false
   [testng] [2024-07-16 01:59:36,119] [main] testng.allow-missing = false
   [testng] [2024-07-16 01:59:36,119] [main] user.language = en
   [testng] [2024-07-16 01:59:36,119] [main] user.country = ${user.country}
   [testng] [2024-07-16 01:59:36,119] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-16 01:59:37,249] [main] ----------------------------------------
   [testng] [2024-07-16 01:59:37,249] [main] Total files: 40
   [testng] [2024-07-16 01:59:37,249] [main] Scan time: 1.13 s (28 ms/file)
   [testng] [2024-07-16 01:59:37,249] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 38 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-16 02:03:31,900] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi: 
   [testng] 02:03:31,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:03:31,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:31,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_02-03-31.log]
   [testng] 02:03:31,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2d7419 - End of configuration.
   [testng] [2024-07-16 02:03:31,961] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: 
   [testng] 02:03:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:03:31,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:31,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_02-03-31.log]
   [testng] 02:03:31,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4332bba0 - End of configuration.
   [testng] [2024-07-16 02:03:31,995] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: 
   [testng] 02:03:31,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:03:31,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:31,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_02-03-31.log]
   [testng] 02:03:31,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b4d601 - End of configuration.
   [testng] [2024-07-16 02:03:32,010] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: 
   [testng] 02:03:32,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:03:32,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:32,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_02-03-32.log]
   [testng] 02:03:32,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a015a1a - End of configuration.
   [testng] [2024-07-16 02:03:32,027] [pool-1-thread-9] Initializing /data/qa-7450/MVI_3610.AVI: 
   [testng] 02:03:32,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:03:32,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:32,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_02-03-32.log]
   [testng] 02:03:32,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346e2887 - End of configuration.
   [testng] [2024-07-16 02:03:32,088] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: 
   [testng] 02:03:32,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:03:32,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:32,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_02-03-32.log]
   [testng] 02:03:32,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d0c992 - End of configuration.
   [testng] [2024-07-16 02:03:32,164] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: 
   [testng] 02:03:32,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:03:32,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:32,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_02-03-32.log]
   [testng] 02:03:32,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59926fe3 - End of configuration.
   [testng] [2024-07-16 02:03:32,181] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: 
   [testng] 02:03:32,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:03:32,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:32,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_02-03-32.log]
   [testng] 02:03:32,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2053e1a8 - End of configuration.
   [testng] [2024-07-16 02:03:33,318] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi: 
   [testng] 02:03:33,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:03:33,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:33,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_02-03-33.log]
   [testng] 02:03:33,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e15a66 - End of configuration.
   [testng] [2024-07-16 02:03:33,355] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: 
   [testng] 02:03:33,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:03:33,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:33,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_02-03-33.log]
   [testng] 02:03:33,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40e31214 - End of configuration.
   [testng] [2024-07-16 02:03:33,381] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: 
   [testng] 02:03:33,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:03:33,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:33,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_02-03-33.log]
   [testng] 02:03:33,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3830b2 - End of configuration.
   [testng] [2024-07-16 02:03:34,154] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: 
   [testng] 02:03:34,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:03:34,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:03:34,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_02-03-34.log]
   [testng] 02:03:34,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271a0df1 - End of configuration.
   [testng] [2024-07-16 02:03:35,510] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi: 
   [testng] [2024-07-16 02:03:35,542] [pool-1-thread-4] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: 
   [testng] [2024-07-16 02:03:35,565] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: 
   [testng] [2024-07-16 02:03:35,594] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-old.avi: 
   [testng] [2024-07-16 02:03:35,774] [pool-1-thread-2] Initializing /data/william/worm.avi: 
   [testng] [2024-07-16 02:03:35,786] [pool-1-thread-12] Initializing /data/chip_avi/Level001-ES-083.avi: 
   [testng] [2024-07-16 02:03:35,807] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: 
   [testng] [2024-07-16 02:03:35,911] [pool-1-thread-9] Initializing /data/kurt/40x_6um_2.avi: 
   [testng] [2024-07-16 02:03:36,083] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi: 
   [testng] [2024-07-16 02:03:36,118] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: 
   [testng] [2024-07-16 02:03:36,292] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: 
   [testng] [2024-07-16 02:03:36,373] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: 
   [testng] [2024-07-16 02:03:36,402] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: 
   [testng] [2024-07-16 02:03:36,520] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: 
   [testng] [2024-07-16 02:03:36,916] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: 
   [testng] [2024-07-16 02:03:37,150] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 2.avi: 
   [testng] [2024-07-16 02:03:37,194] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: 
   [testng] [2024-07-16 02:03:37,371] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_10_20.avi: 
   [testng] [2024-07-16 02:03:37,448] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: 
   [testng] [2024-07-16 02:03:37,500] [pool-1-thread-11] Initializing /data/curtis/mri-stack-bf.avi: 
   [testng] [2024-07-16 02:03:37,582] [pool-1-thread-5] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: 
   [testng] [2024-07-16 02:03:37,774] [pool-1-thread-9] Initializing /data/chip_avi/Level003-DB-089.avi: 
   [testng] [2024-07-16 02:03:37,786] [pool-1-thread-11] Initializing /data/chip_avi/Level004-WA-116.avi: 
   [testng] [2024-07-16 02:03:38,013] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: 
   [testng] [2024-07-16 02:03:38,043] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: 
   [testng] [2024-07-16 02:03:38,163] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2014, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 4 minutes 13 seconds
Finished: SUCCESS