Started by upstream project "BIOFORMATS-test-repo" build number 122
originally caused by:
Started by upstream project "Trigger" build number 139
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9187217435104209529.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19086_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:03:49,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:03:49,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:03:49,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:03:49,468 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:03:49,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:03:49,469 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:03:49,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:03:49,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:03:49,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:03:49,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:03:49,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:03:49,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:03:49,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:03:49,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:03:49,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:03:49,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:03:49,674 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:03:49,674 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:03:49,674 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:03:49,674 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:03:49,674 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:03:49,675 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:03:49,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-16 02:03:49,684] [main] java.version = 11.0.16
[testng] 02:03:49,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:03:49,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:03:49,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_02-03-49.log]
[testng] 02:03:49,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-16 02:03:49,733] [main] testng.directory = /data
[testng] [2024-07-16 02:03:49,733] [main] testng.configDirectory = /config
[testng] [2024-07-16 02:03:49,743] [main] testng.multiplier = 1.0
[testng] [2024-07-16 02:03:49,744] [main] testng.in-memory = false
[testng] [2024-07-16 02:03:49,744] [main] testng.allow-missing = false
[testng] [2024-07-16 02:03:49,744] [main] user.language = en
[testng] [2024-07-16 02:03:49,745] [main] user.country = ${user.country}
[testng] [2024-07-16 02:03:49,745] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-16 02:03:58,061] [main] ----------------------------------------
[testng] [2024-07-16 02:03:58,061] [main] Total files: 268
[testng] [2024-07-16 02:03:58,061] [main] Scan time: 8.316 s (31 ms/file)
[testng] [2024-07-16 02:03:58,061] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-16 02:04:08,262] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] 02:04:08,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:04:08,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_02-04-08.log]
[testng] 02:04:08,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f5c1d12 - End of configuration.
[testng] [2024-07-16 02:04:08,307] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] 02:04:08,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:04:08,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_02-04-08.log]
[testng] 02:04:08,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79caa6f3 - End of configuration.
[testng] [2024-07-16 02:04:08,323] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] 02:04:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:04:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_02-04-08.log]
[testng] 02:04:08,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c7c5a98 - End of configuration.
[testng] [2024-07-16 02:04:08,338] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] 02:04:08,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:04:08,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_02-04-08.log]
[testng] 02:04:08,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f6774d - End of configuration.
[testng] [2024-07-16 02:04:08,370] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] 02:04:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:04:08,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_02-04-08.log]
[testng] 02:04:08,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e8344d - End of configuration.
[testng] [2024-07-16 02:04:08,380] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] 02:04:08,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:04:08,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_02-04-08.log]
[testng] 02:04:08,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c43e99 - End of configuration.
[testng] [2024-07-16 02:04:08,417] [pool-1-thread-7] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] 02:04:08,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:04:08,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_02-04-08.log]
[testng] 02:04:08,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250475be - End of configuration.
[testng] [2024-07-16 02:04:08,436] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] 02:04:08,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:04:08,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_02-04-08.log]
[testng] 02:04:08,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a5a20d - End of configuration.
[testng] [2024-07-16 02:04:08,448] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] 02:04:08,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:04:08,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_02-04-08.log]
[testng] 02:04:08,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55e7b925 - End of configuration.
[testng] [2024-07-16 02:04:08,458] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] 02:04:08,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:04:08,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_02-04-08.log]
[testng] 02:04:08,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a7048d - End of configuration.
[testng] [2024-07-16 02:04:08,474] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] 02:04:08,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:04:08,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_02-04-08.log]
[testng] 02:04:08,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee98be0 - End of configuration.
[testng] [2024-07-16 02:04:08,497] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] 02:04:08,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:04:08,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:04:08,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_02-04-08.log]
[testng] 02:04:08,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc61d5c - End of configuration.
[testng] [2024-07-16 02:04:09,401] [pool-1-thread-9] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-07-16 02:04:09,778] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-07-16 02:04:09,799] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-07-16 02:04:09,809] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-07-16 02:04:09,821] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-07-16 02:04:09,975] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-07-16 02:04:10,004] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-07-16 02:04:10,150] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-07-16 02:04:10,158] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-07-16 02:04:10,302] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-07-16 02:04:10,325] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-07-16 02:04:10,336] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-07-16 02:04:10,545] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-07-16 02:04:10,559] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-07-16 02:04:10,617] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-07-16 02:04:10,643] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-07-16 02:04:10,726] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-07-16 02:04:10,848] [pool-1-thread-12] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-07-16 02:04:10,873] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-07-16 02:04:10,894] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-07-16 02:04:10,909] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-07-16 02:04:10,933] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-07-16 02:04:10,952] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-07-16 02:04:11,074] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-07-16 02:04:11,177] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-07-16 02:04:11,244] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-07-16 02:04:11,280] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] [2024-07-16 02:04:11,293] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-07-16 02:04:11,326] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-07-16 02:04:11,353] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-07-16 02:04:11,378] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-07-16 02:04:11,415] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-07-16 02:04:11,557] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-07-16 02:04:11,584] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-07-16 02:04:11,601] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-07-16 02:04:11,632] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-07-16 02:04:11,654] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-07-16 02:04:11,699] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-07-16 02:04:11,807] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-07-16 02:04:11,828] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-07-16 02:04:11,846] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-07-16 02:04:11,908] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-07-16 02:04:11,998] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-07-16 02:04:12,054] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-07-16 02:04:12,164] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-07-16 02:04:12,221] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-07-16 02:04:12,269] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-07-16 02:04:12,310] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-07-16 02:04:12,364] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-07-16 02:04:12,416] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-07-16 02:04:12,453] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-07-16 02:04:12,481] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-07-16 02:04:12,489] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-07-16 02:04:12,506] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-07-16 02:04:12,558] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-07-16 02:04:12,574] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-07-16 02:04:12,652] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-07-16 02:04:12,675] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-07-16 02:04:12,739] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-07-16 02:04:12,748] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-07-16 02:04:12,869] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-07-16 02:04:12,881] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-07-16 02:04:12,903] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-07-16 02:04:12,944] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-07-16 02:04:12,973] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-07-16 02:04:12,991] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-07-16 02:04:13,138] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-07-16 02:04:13,147] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-07-16 02:04:13,223] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-07-16 02:04:13,321] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-07-16 02:04:13,333] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-07-16 02:04:13,398] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-07-16 02:04:13,404] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-07-16 02:04:13,539] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-07-16 02:04:13,569] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-07-16 02:04:13,603] [pool-1-thread-9] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-07-16 02:04:13,614] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-07-16 02:04:13,624] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-07-16 02:04:13,638] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] [2024-07-16 02:04:13,661] [pool-1-thread-3] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-07-16 02:04:13,672] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-07-16 02:04:13,734] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-07-16 02:04:13,771] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-07-16 02:04:13,937] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-07-16 02:04:13,953] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-07-16 02:04:13,961] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-07-16 02:04:14,010] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-07-16 02:04:14,092] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-07-16 02:04:14,143] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-07-16 02:04:14,183] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-07-16 02:04:14,189] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-07-16 02:04:14,268] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-07-16 02:04:14,278] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-07-16 02:04:14,321] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-07-16 02:04:14,399] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-07-16 02:04:14,411] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-07-16 02:04:14,425] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] [2024-07-16 02:04:14,453] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-07-16 02:04:14,473] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-07-16 02:04:14,491] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-07-16 02:04:14,582] [pool-1-thread-10] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-07-16 02:04:14,671] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-07-16 02:04:14,686] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-07-16 02:04:14,722] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-07-16 02:04:14,758] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-07-16 02:04:14,785] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-07-16 02:04:14,891] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-07-16 02:04:14,911] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-07-16 02:04:14,985] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-07-16 02:04:14,995] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-07-16 02:04:15,008] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-07-16 02:04:15,032] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-07-16 02:04:15,089] [pool-1-thread-9] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-07-16 02:04:15,133] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-07-16 02:04:15,218] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-07-16 02:04:15,240] [pool-1-thread-10] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-07-16 02:04:15,300] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-07-16 02:04:15,366] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-07-16 02:04:15,448] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-07-16 02:04:15,465] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-07-16 02:04:15,510] [pool-1-thread-5] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-07-16 02:04:15,532] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-07-16 02:04:15,570] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-07-16 02:04:15,581] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-07-16 02:04:15,597] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] [2024-07-16 02:04:15,783] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-07-16 02:04:15,843] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-07-16 02:04:15,912] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-07-16 02:04:15,929] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-07-16 02:04:15,946] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-07-16 02:04:15,961] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-07-16 02:04:15,994] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-07-16 02:04:16,217] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-07-16 02:04:16,253] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-07-16 02:04:16,311] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-07-16 02:04:16,381] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-07-16 02:04:16,474] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-07-16 02:04:16,500] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-07-16 02:04:16,515] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-07-16 02:04:16,526] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] [2024-07-16 02:04:16,776] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-07-16 02:04:16,834] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-07-16 02:04:16,927] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-07-16 02:04:17,071] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-07-16 02:04:17,135] [pool-1-thread-8] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-07-16 02:04:17,142] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-07-16 02:04:17,170] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] [2024-07-16 02:04:17,286] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 33 seconds
Finished: SUCCESS