Started by upstream project "BIOFORMATS-test-repo" build number 122
originally caused by:
 Started by upstream project "Trigger" build number 139
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1728210501019722088.sh
+ '[' analyze = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19110_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:11:51,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:11:51,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:11:51,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:11:51,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:11:51,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:11:51,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:11:51,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:11:51,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:11:51,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:11:51,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:11:51,967 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:11:51,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:11:52,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:11:52,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:11:52,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:11:52,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:11:52,182 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:11:52,183 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:11:52,183 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:11:52,183 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:11:52,183 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:11:52,184 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:11:52,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 218 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-16 02:11:52,194] [main] java.version = 11.0.16
   [testng] 02:11:52,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:11:52,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:52,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-16_02-11-52.log]
   [testng] 02:11:52,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-16 02:11:52,247] [main] testng.directory = /data
   [testng] [2024-07-16 02:11:52,247] [main] testng.configDirectory = /config
   [testng] [2024-07-16 02:11:52,258] [main] testng.multiplier = 1.0
   [testng] [2024-07-16 02:11:52,260] [main] testng.in-memory = false
   [testng] [2024-07-16 02:11:52,260] [main] testng.allow-missing = false
   [testng] [2024-07-16 02:11:52,260] [main] user.language = en
   [testng] [2024-07-16 02:11:52,260] [main] user.country = ${user.country}
   [testng] [2024-07-16 02:11:52,260] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-16 02:11:52,952] [main] ----------------------------------------
   [testng] [2024-07-16 02:11:52,952] [main] Total files: 21
   [testng] [2024-07-16 02:11:52,952] [main] Scan time: 0.692 s (32 ms/file)
   [testng] [2024-07-16 02:11:52,952] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-16 02:11:54,957] [pool-1-thread-1] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr: 
   [testng] 02:11:54,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:11:54,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:54,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-16_02-11-54.log]
   [testng] 02:11:54,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587bdc7d - End of configuration.
   [testng] [2024-07-16 02:11:55,036] [pool-1-thread-11] Initializing /data/frans/CT_FOOT.hdr: 
   [testng] 02:11:55,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:11:55,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-16_02-11-55.log]
   [testng] 02:11:55,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3113eb60 - End of configuration.
   [testng] [2024-07-16 02:11:55,063] [pool-1-thread-12] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr: 
   [testng] 02:11:55,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:11:55,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-16_02-11-55.log]
   [testng] 02:11:55,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c8dd4fc - End of configuration.
   [testng] [2024-07-16 02:11:55,081] [pool-1-thread-10] Initializing /data/frans/CT_WHOLE.hdr: 
   [testng] 02:11:55,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:11:55,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-16_02-11-55.log]
   [testng] 02:11:55,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687e242f - End of configuration.
   [testng] [2024-07-16 02:11:55,097] [pool-1-thread-9] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr: 
   [testng] 02:11:55,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:11:55,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-16_02-11-55.log]
   [testng] 02:11:55,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@508c8310 - End of configuration.
   [testng] [2024-07-16 02:11:55,119] [pool-1-thread-8] Initializing /data/frans/MR_CHEST.hdr: 
   [testng] 02:11:55,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:11:55,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-16_02-11-55.log]
   [testng] 02:11:55,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11dd9fd1 - End of configuration.
   [testng] [2024-07-16 02:11:55,133] [pool-1-thread-7] Initializing /data/frans/ch2.hdr: 
   [testng] 02:11:55,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:11:55,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-16_02-11-55.log]
   [testng] 02:11:55,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b6f219f - End of configuration.
   [testng] [2024-07-16 02:11:55,151] [pool-1-thread-6] Initializing /data/frans/betmask.hdr: 
   [testng] 02:11:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:11:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-16_02-11-55.log]
   [testng] 02:11:55,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c080ba9 - End of configuration.
   [testng] [2024-07-16 02:11:55,168] [pool-1-thread-5] Initializing /data/frans/aal.hdr: 
   [testng] 02:11:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:11:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-16_02-11-55.log]
   [testng] 02:11:55,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a133095 - End of configuration.
   [testng] [2024-07-16 02:11:55,182] [pool-1-thread-4] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr: 
   [testng] 02:11:55,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:11:55,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-16_02-11-55.log]
   [testng] 02:11:55,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a044159 - End of configuration.
   [testng] [2024-07-16 02:11:55,200] [pool-1-thread-3] Initializing /data/frans/ch2bet.hdr: 
   [testng] 02:11:55,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:11:55,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-16_02-11-55.log]
   [testng] 02:11:55,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@208dca37 - End of configuration.
   [testng] [2024-07-16 02:11:55,212] [pool-1-thread-2] Initializing /data/frans/CT_KNEE.hdr: 
   [testng] 02:11:55,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:11:55,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:11:55,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-16_02-11-55.log]
   [testng] 02:11:55,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51d2ce29 - End of configuration.
   [testng] [2024-07-16 02:11:57,229] [pool-1-thread-6] Initializing /data/frans/CT_CRANI.hdr: 
   [testng] [2024-07-16 02:11:57,241] [pool-1-thread-7] Initializing /data/frans/CT_HAND.hdr: 
   [testng] [2024-07-16 02:11:57,253] [pool-1-thread-1] Initializing /data/frans/CT_CHEST.hdr: 
   [testng] [2024-07-16 02:11:57,264] [pool-1-thread-3] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr: 
   [testng] [2024-07-16 02:11:57,277] [pool-1-thread-5] Initializing /data/frans/m000-MR_CHEST.gif: 
   [testng] [2024-07-16 02:11:57,298] [pool-1-thread-8] Initializing /data/frans/CT_APERT.hdr: 
   [testng] [2024-07-16 02:11:57,307] [pool-1-thread-2] Initializing /data/frans/brodmann.hdr: 
   [testng] [2024-07-16 02:11:57,315] [pool-1-thread-11] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr: 
   [testng] [2024-07-16 02:11:57,323] [pool-1-thread-10] Initializing /data/frans/MR_SEGBRAIN.hdr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS