Started by upstream project "BIOFORMATS-test-repo" build number 123 originally caused by: Started by upstream project "Trigger" build number 140 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins10111492610432952164.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19172_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:59,750 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:59,751 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:59,751 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:59,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:59,753 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:59,753 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:59,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:59,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:59,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:59,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:59,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:59,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:59,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:59,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:00,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:00,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:00,017 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:00,017 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:00,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:00,018 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:00,018 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:21:00,019 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:21:00,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-17 01:21:00,030] [main] java.version = 17.0.2 [testng] 01:21:00,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:00,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:00,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-17_01-21-00.log] [testng] 01:21:00,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-17 01:21:00,086] [main] testng.directory = /data [testng] [2024-07-17 01:21:00,087] [main] testng.configDirectory = /config [testng] [2024-07-17 01:21:00,096] [main] testng.multiplier = 1.0 [testng] [2024-07-17 01:21:00,098] [main] testng.in-memory = false [testng] [2024-07-17 01:21:00,098] [main] testng.allow-missing = false [testng] [2024-07-17 01:21:00,098] [main] user.language = en [testng] [2024-07-17 01:21:00,098] [main] user.country = ${user.country} [testng] [2024-07-17 01:21:00,098] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-17 01:21:15,969] [main] ---------------------------------------- [testng] [2024-07-17 01:21:15,969] [main] Total files: 283 [testng] [2024-07-17 01:21:15,969] [main] Scan time: 15.87 s (56 ms/file) [testng] [2024-07-17 01:21:15,969] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-17 01:28:59,593] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] 01:28:59,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:28:59,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-17_01-28-59.log] [testng] 01:28:59,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f1beceb - End of configuration. [testng] [2024-07-17 01:28:59,676] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] 01:28:59,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:28:59,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-17_01-28-59.log] [testng] 01:28:59,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c2be84 - End of configuration. [testng] [2024-07-17 01:28:59,734] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] 01:28:59,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:28:59,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-17_01-28-59.log] [testng] 01:28:59,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da77c66 - End of configuration. [testng] [2024-07-17 01:28:59,822] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 01:28:59,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:28:59,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-17_01-28-59.log] [testng] 01:28:59,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d51d4c9 - End of configuration. [testng] [2024-07-17 01:28:59,884] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] 01:28:59,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:28:59,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-17_01-28-59.log] [testng] 01:28:59,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e48ca7 - End of configuration. [testng] [2024-07-17 01:28:59,965] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] 01:28:59,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:28:59,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:59,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-17_01-28-59.log] [testng] 01:28:59,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdaec6d - End of configuration. [testng] [2024-07-17 01:29:00,042] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] 01:29:00,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:00,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:00,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-17_01-29-00.log] [testng] 01:29:00,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62c78043 - End of configuration. [testng] [2024-07-17 01:29:00,180] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif: [testng] 01:29:00,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:00,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:00,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-17_01-29-00.log] [testng] 01:29:00,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@659063e0 - End of configuration. [testng] [2024-07-17 01:29:00,233] [pool-1-thread-5] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] 01:29:00,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:00,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:00,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-17_01-29-00.log] [testng] 01:29:00,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12763ab0 - End of configuration. [testng] [2024-07-17 01:29:00,299] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:29:00,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:00,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:00,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-17_01-29-00.log] [testng] 01:29:00,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6119c2c4 - End of configuration. [testng] [2024-07-17 01:29:00,369] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] 01:29:00,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:00,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:00,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-17_01-29-00.log] [testng] 01:29:00,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a69ffc - End of configuration. [testng] [2024-07-17 01:29:01,169] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] 01:29:01,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:01,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:01,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-17_01-29-01.log] [testng] 01:29:01,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13718446 - End of configuration. [testng] [2024-07-17 01:29:04,133] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-07-17 01:29:04,270] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-17 01:29:04,386] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-07-17 01:29:04,458] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-17 01:29:04,519] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-17 01:29:04,577] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-07-17 01:29:04,631] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-07-17 01:29:04,772] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-17 01:29:04,849] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-17 01:29:04,893] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-17 01:29:04,973] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-17 01:29:06,303] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-07-17 01:29:06,395] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-17 01:29:06,462] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir: [testng] [2024-07-17 01:29:08,250] [pool-1-thread-8] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-17 01:29:08,491] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-17 01:29:09,246] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-17 01:29:09,708] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-17 01:29:09,771] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-07-17 01:29:10,101] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-17 01:29:10,770] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-17 01:29:11,277] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-17 01:29:11,470] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-07-17 01:29:11,670] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-17 01:29:11,912] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-07-17 01:29:12,076] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-17 01:29:12,186] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-17 01:29:12,398] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-07-17 01:29:13,441] [pool-1-thread-1] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-17 01:29:13,496] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-17 01:29:14,087] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-07-17 01:29:14,376] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-07-17 01:29:14,490] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-07-17 01:29:15,154] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-17 01:29:15,236] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-17 01:29:15,956] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-07-17 01:29:16,094] [pool-1-thread-5] testPixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-17 01:29:16,131] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-07-17 01:29:16,473] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-07-17 01:29:16,703] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-07-17 01:29:16,708] [pool-1-thread-5] testSubimagePixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-17 01:29:16,834] [pool-1-thread-7] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-17 01:29:16,894] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-07-17 01:29:17,005] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-17 01:29:17,198] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-17 01:29:17,409] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-17 01:29:17,837] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-17 01:29:18,279] [pool-1-thread-5] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-17 01:29:18,304] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-07-17 01:29:18,542] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-07-17 01:29:18,676] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-07-17 01:29:18,829] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-07-17 01:29:18,952] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-07-17 01:29:19,030] [pool-1-thread-7] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-07-17 01:29:19,085] [pool-1-thread-5] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-17 01:29:19,175] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-07-17 01:29:19,850] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-07-17 01:29:19,993] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-17 01:29:20,103] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-17 01:29:20,372] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-07-17 01:29:21,059] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-17 01:29:21,148] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-07-17 01:29:21,277] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-17 01:29:21,337] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-17 01:29:21,447] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-07-17 01:29:21,511] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-07-17 01:29:21,594] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-17 01:29:21,866] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-07-17 01:29:21,939] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-07-17 01:29:22,168] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-07-17 01:29:22,314] [pool-1-thread-7] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-07-17 01:29:22,613] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-07-17 01:29:22,698] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-07-17 01:29:22,854] [pool-1-thread-12] Initializing /data/qa-17335/1.oir: [testng] [2024-07-17 01:29:22,923] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-17 01:29:22,968] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-07-17 01:29:23,506] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-07-17 01:29:23,879] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-17 01:29:24,122] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-07-17 01:29:24,303] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-17 01:29:24,415] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-17 01:29:24,529] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-17 01:29:24,552] [pool-1-thread-5] testPixelsHashes: FAILED (series 0, md5 6a7670ae841e8d5e50e1059b48d8c0dd, expected e8ab9632b15dd4bf5daee4f34fd3d7ad or null) [testng] [2024-07-17 01:29:24,603] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-07-17 01:29:24,745] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-07-17 01:29:24,855] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-17 01:29:24,995] [pool-1-thread-5] testSubimagePixelsHashes: FAILED (series 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-17 01:29:25,033] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-07-17 01:29:25,125] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-07-17 01:29:25,564] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-17 01:29:25,674] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-17 01:29:26,151] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-17 01:29:26,214] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-17 01:29:26,358] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-07-17 01:29:26,397] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-07-17 01:29:27,120] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-17 01:29:27,227] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-07-17 01:29:27,472] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-17 01:29:27,578] [pool-1-thread-5] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-17 01:29:27,870] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-17 01:29:52,327] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-17 01:29:52,386] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-07-17 01:29:52,686] [pool-1-thread-5] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-17 01:29:52,709] [pool-1-thread-5] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-17 01:29:52,764] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-07-17 01:29:52,826] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-17 01:29:54,247] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-17 01:29:54,880] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-07-17 01:29:54,931] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-17 01:29:56,938] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-07-17 01:29:57,413] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-07-17 01:29:57,563] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-17 01:29:57,709] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-17 01:29:57,912] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-17 01:30:01,268] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-17 01:30:01,639] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-17 01:30:05,383] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-07-17 01:30:05,522] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-17 01:30:06,051] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-17 01:30:06,136] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-07-17 01:30:06,601] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-07-17 01:30:06,668] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-07-17 01:30:06,747] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-17 01:30:07,634] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir: [testng] [2024-07-17 01:30:09,152] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-17 01:30:09,235] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-17 01:30:09,351] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-17 01:30:09,800] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-07-17 01:30:10,915] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-17 01:30:11,618] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-17 01:30:11,809] [pool-1-thread-10] Initializing /data/qa-17919/f10187.oir: [testng] [2024-07-17 01:30:27,730] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-17 01:30:29,081] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-17 01:30:30,013] [pool-1-thread-6] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-17 01:30:30,442] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-17 01:30:33,006] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-07-17 01:30:33,205] [pool-1-thread-2] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-17 01:30:33,408] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-17 01:30:33,608] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-17 01:30:34,825] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-17 01:30:34,912] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-17 01:30:35,412] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-07-17 01:30:35,705] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-17 01:30:35,954] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-17 01:30:36,607] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-07-17 01:30:36,783] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-07-17 01:30:36,945] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-17 01:30:37,349] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-17 01:30:38,079] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-07-17 01:30:38,603] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-17 01:30:39,177] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-17 01:30:39,450] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-07-17 01:30:39,555] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-17 01:30:39,702] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-07-17 01:30:40,435] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-07-17 01:30:42,378] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-17 01:30:42,554] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-07-17 01:30:43,058] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-17 01:30:43,708] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-07-17 01:30:43,894] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-07-17 01:30:44,245] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-17 01:30:44,560] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-07-17 01:30:45,200] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-17 01:30:45,578] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-17 01:31:04,212] [pool-1-thread-6] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-17 01:31:47,590] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-07-17 01:31:49,058] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-07-17 01:31:49,638] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-17 01:31:49,887] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-07-17 01:31:50,398] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-17 01:31:50,728] [pool-1-thread-11] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-07-17 01:31:51,082] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-17 01:31:51,437] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-07-17 01:31:51,555] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-07-17 01:31:56,459] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-07-17 01:31:56,740] [pool-1-thread-8] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-07-17 01:31:57,017] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-07-17 01:31:57,850] [pool-1-thread-7] Initializing /data/qa-17270/image1.oir: [testng] [2024-07-17 01:31:57,920] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-07-17 01:31:58,119] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-17 01:31:59,513] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-07-17 01:31:59,607] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 8, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 41 minutes 12 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE