Started by upstream project "BIOFORMATS-test-repo" build number 123
originally caused by:
Started by upstream project "Trigger" build number 140
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16233593504099363484.sh
+ '[' perkinelmer-densitometer = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19229_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:42:53,304 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:42:53,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:42:53,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:42:53,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:42:53,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:42:53,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:42:53,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:42:53,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:42:53,308 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:42:53,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:42:53,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:42:53,310 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:42:53,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:42:53,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:42:53,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:42:53,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:42:53,507 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:42:53,507 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:42:53,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:42:53,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:42:53,508 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:42:53,509 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:42:53,509 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-17 01:42:53,517] [main] java.version = 17.0.2
[testng] 01:42:53,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:42:53,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:53,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-17_01-42-53.log]
[testng] 01:42:53,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-17 01:42:53,566] [main] testng.directory = /data
[testng] [2024-07-17 01:42:53,566] [main] testng.configDirectory = /config
[testng] [2024-07-17 01:42:53,574] [main] testng.multiplier = 1.0
[testng] [2024-07-17 01:42:53,576] [main] testng.in-memory = false
[testng] [2024-07-17 01:42:53,576] [main] testng.allow-missing = false
[testng] [2024-07-17 01:42:53,576] [main] user.language = en
[testng] [2024-07-17 01:42:53,576] [main] user.country = ${user.country}
[testng] [2024-07-17 01:42:53,576] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-17 01:42:54,826] [main] ----------------------------------------
[testng] [2024-07-17 01:42:54,826] [main] Total files: 19
[testng] [2024-07-17 01:42:54,826] [main] Scan time: 1.25 s (65 ms/file)
[testng] [2024-07-17 01:42:54,826] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-17 01:42:55,715] [pool-1-thread-1] Initializing /data/ascb/Y7616001.hdr:
[testng] 01:42:55,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:42:55,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-17_01-42-55.log]
[testng] 01:42:55,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70809bba - End of configuration.
[testng] [2024-07-17 01:42:55,739] [pool-1-thread-11] Initializing /data/ascb/DP1190.tif:
[testng] 01:42:55,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:42:55,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-17_01-42-55.log]
[testng] 01:42:55,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac4219 - End of configuration.
[testng] [2024-07-17 01:42:55,809] [pool-1-thread-10] Initializing /data/ascb/3/PT118001.hdr:
[testng] 01:42:55,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:42:55,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-17_01-42-55.log]
[testng] 01:42:55,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@954fb2a - End of configuration.
[testng] [2024-07-17 01:42:55,827] [pool-1-thread-9] Initializing /data/ascb/1/T8710001.hdr:
[testng] 01:42:55,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:42:55,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-17_01-42-55.log]
[testng] 01:42:55,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737d2467 - End of configuration.
[testng] [2024-07-17 01:42:55,842] [pool-1-thread-8] Initializing /data/ascb/2/V8701001.hdr:
[testng] 01:42:55,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:42:55,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-17_01-42-55.log]
[testng] 01:42:55,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78d22035 - End of configuration.
[testng] [2024-07-17 01:42:55,865] [pool-1-thread-7] Initializing /data/ascb/Y7616001.tif:
[testng] 01:42:55,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:42:55,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-17_01-42-55.log]
[testng] 01:42:55,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42a50ad1 - End of configuration.
[testng] [2024-07-17 01:42:55,953] [pool-1-thread-6] Initializing /data/ascb/U8092001.tif:
[testng] 01:42:55,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:42:55,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:55,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-17_01-42-55.log]
[testng] 01:42:55,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e8abc6e - End of configuration.
[testng] [2024-07-17 01:42:56,013] [pool-1-thread-5] Initializing /data/ascb/U8092001.hdr:
[testng] 01:42:56,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:42:56,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:56,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-17_01-42-56.log]
[testng] 01:42:56,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cc54f0d - End of configuration.
[testng] [2024-07-17 01:42:56,026] [pool-1-thread-4] Initializing /data/ascb/PT1173A001.tif:
[testng] 01:42:56,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:42:56,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:56,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-17_01-42-56.log]
[testng] 01:42:56,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f944eda - End of configuration.
[testng] [2024-07-17 01:42:56,109] [pool-1-thread-3] Initializing /data/ascb/DP1190.hdr:
[testng] 01:42:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:42:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:56,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-17_01-42-56.log]
[testng] 01:42:56,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68663bec - End of configuration.
[testng] [2024-07-17 01:42:56,126] [pool-1-thread-2] Initializing /data/ascb/PT1173A001.hdr:
[testng] 01:42:56,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:42:56,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:56,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-17_01-42-56.log]
[testng] 01:42:56,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510ff2d9 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS