Started by upstream project "BIOFORMATS-test-repo" build number 123
originally caused by:
Started by upstream project "Trigger" build number 140
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15146149360957233918.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19295_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:23:15,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:23:15,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:23:15,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:23:15,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:23:15,561 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:23:15,562 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:23:15,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:23:15,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:23:15,562 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
[testng] 02:23:15,563 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
[testng] 02:23:15,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 416 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-17 02:23:15,589] [main] java.version = 17.0.2
[testng] 02:23:15,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:23:15,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:15,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-17_02-23-15.log]
[testng] 02:23:15,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-17 02:23:15,654] [main] testng.directory = /data
[testng] [2024-07-17 02:23:15,654] [main] testng.configDirectory = /config
[testng] [2024-07-17 02:23:15,665] [main] testng.multiplier = 1.0
[testng] [2024-07-17 02:23:15,667] [main] testng.in-memory = false
[testng] [2024-07-17 02:23:15,667] [main] testng.allow-missing = false
[testng] [2024-07-17 02:23:15,667] [main] user.language = en
[testng] [2024-07-17 02:23:15,667] [main] user.country = ${user.country}
[testng] [2024-07-17 02:23:15,667] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-17 02:23:16,799] [main] ----------------------------------------
[testng] [2024-07-17 02:23:16,799] [main] Total files: 32
[testng] [2024-07-17 02:23:16,799] [main] Scan time: 1.132 s (35 ms/file)
[testng] [2024-07-17 02:23:16,799] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-17 02:23:20,196] [pool-1-thread-1] Initializing /data/david/Opened in imageJ.tiff:
[testng] 02:23:20,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:23:20,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-17_02-23-20.log]
[testng] 02:23:20,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e1084f2 - End of configuration.
[testng] [2024-07-17 02:23:20,287] [pool-1-thread-12] Initializing /data/keith/test2.1sc:
[testng] 02:23:20,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:23:20,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-17_02-23-20.log]
[testng] 02:23:20,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@698bf392 - End of configuration.
[testng] [2024-07-17 02:23:20,326] [pool-1-thread-11] Initializing /data/keith/PF020328saur v3.1sc:
[testng] 02:23:20,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:23:20,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-17_02-23-20.log]
[testng] 02:23:20,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3bc315 - End of configuration.
[testng] [2024-07-17 02:23:20,349] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg:
[testng] 02:23:20,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:23:20,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-17_02-23-20.log]
[testng] 02:23:20,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@766be0b6 - End of configuration.
[testng] [2024-07-17 02:23:20,403] [pool-1-thread-9] Initializing /data/adrian/test_img.1sc:
[testng] 02:23:20,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:23:20,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-17_02-23-20.log]
[testng] 02:23:20,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34bbcb71 - End of configuration.
[testng] [2024-07-17 02:23:20,452] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc:
[testng] 02:23:20,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:23:20,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-17_02-23-20.log]
[testng] 02:23:20,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49563241 - End of configuration.
[testng] [2024-07-17 02:23:20,498] [pool-1-thread-7] Initializing /data/geert/good example1.1sc:
[testng] 02:23:20,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:23:20,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-17_02-23-20.log]
[testng] 02:23:20,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@350162b7 - End of configuration.
[testng] [2024-07-17 02:23:20,562] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] 02:23:20,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:23:20,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-17_02-23-20.log]
[testng] 02:23:20,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aac21d4 - End of configuration.
[testng] [2024-07-17 02:23:20,598] [pool-1-thread-5] Initializing /data/qa-16880/c-src v7.1sc:
[testng] 02:23:20,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:23:20,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-17_02-23-20.log]
[testng] 02:23:20,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463bfac - End of configuration.
[testng] [2024-07-17 02:23:20,636] [pool-1-thread-4] Initializing /data/keith/test.1sc:
[testng] 02:23:20,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:23:20,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-17_02-23-20.log]
[testng] 02:23:20,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f731d9e - End of configuration.
[testng] [2024-07-17 02:23:20,677] [pool-1-thread-3] Initializing /data/qa-29459/bad.1sc:
[testng] 02:23:20,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:23:20,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-17_02-23-20.log]
[testng] 02:23:20,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@309adead - End of configuration.
[testng] [2024-07-17 02:23:20,727] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] 02:23:20,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:23:20,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:23:20,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-17_02-23-20.log]
[testng] 02:23:20,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec6927b - End of configuration.
[testng] [2024-07-17 02:23:22,681] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2024-07-17 02:23:22,783] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-07-17 02:23:22,813] [pool-1-thread-4] Initializing /data/geert/good example1.1sc.jpg:
[testng] [2024-07-17 02:23:23,104] [pool-1-thread-10] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] [2024-07-17 02:23:23,125] [pool-1-thread-3] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] [2024-07-17 02:23:23,145] [pool-1-thread-8] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] [2024-07-17 02:23:23,383] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] [2024-07-17 02:23:23,489] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] [2024-07-17 02:23:23,731] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2024-07-17 02:23:23,798] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc:
[testng] [2024-07-17 02:23:23,882] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-07-17 02:23:24,217] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-07-17 02:23:24,256] [pool-1-thread-3] Initializing /data/samples/imagesEight.1sc:
[testng] [2024-07-17 02:23:24,401] [pool-1-thread-2] Initializing /data/samples/Criterion.1sc:
[testng] [2024-07-17 02:23:24,469] [pool-1-thread-10] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2024-07-17 02:23:24,580] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc:
[testng] [2024-07-17 02:23:24,673] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2024-07-17 02:23:24,939] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] [2024-07-17 02:23:25,021] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc:
[testng] [2024-07-17 02:23:25,309] [pool-1-thread-3] Initializing /data/qa-29469/bad3.1sc:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS