Started by upstream project "BIOFORMATS-test-repo" build number 124
originally caused by:
Started by upstream project "Trigger" build number 141
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18064380424974551706.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19353_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:24:27,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:24:27,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:24:27,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:24:27,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:24:27,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:24:27,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:24:27,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:24:27,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:24:27,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:24:27,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:24:27,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:24:27,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:24:27,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:24:27,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:24:27,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:24:27,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:24:27,717 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:24:27,717 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:24:27,717 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:24:27,718 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:24:27,718 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:24:27,719 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:24:27,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-18 01:24:27,728] [main] java.version = 21
[testng] 01:24:27,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:24:27,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:27,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_01-24-27.log]
[testng] 01:24:27,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-18 01:24:27,788] [main] testng.directory = /data
[testng] [2024-07-18 01:24:27,788] [main] testng.configDirectory = /config
[testng] [2024-07-18 01:24:27,797] [main] testng.multiplier = 1.0
[testng] [2024-07-18 01:24:27,798] [main] testng.in-memory = false
[testng] [2024-07-18 01:24:27,798] [main] testng.allow-missing = false
[testng] [2024-07-18 01:24:27,798] [main] user.language = en
[testng] [2024-07-18 01:24:27,798] [main] user.country = ${user.country}
[testng] [2024-07-18 01:24:27,798] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-18 01:24:29,223] [main] ----------------------------------------
[testng] [2024-07-18 01:24:29,223] [main] Total files: 21
[testng] [2024-07-18 01:24:29,223] [main] Scan time: 1.425 s (67 ms/file)
[testng] [2024-07-18 01:24:29,224] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-18 01:24:30,983] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 01:24:30,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:24:30,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:30,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_01-24-30.log]
[testng] 01:24:30,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b787b7c - End of configuration.
[testng] [2024-07-18 01:24:31,035] [pool-1-thread-12] Initializing /data/venu/VENU02.IMG:
[testng] 01:24:31,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:24:31,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_01-24-31.log]
[testng] 01:24:31,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f0e9246 - End of configuration.
[testng] [2024-07-18 01:24:31,061] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 01:24:31,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:24:31,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_01-24-31.log]
[testng] 01:24:31,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53250da7 - End of configuration.
[testng] [2024-07-18 01:24:31,146] [pool-1-thread-10] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 01:24:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:24:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_01-24-31.log]
[testng] 01:24:31,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6efab3 - End of configuration.
[testng] [2024-07-18 01:24:31,226] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 01:24:31,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:24:31,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_01-24-31.log]
[testng] 01:24:31,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37af3e16 - End of configuration.
[testng] [2024-07-18 01:24:31,264] [pool-1-thread-8] Initializing /data/venu/VENU01.IMG:
[testng] 01:24:31,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:24:31,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_01-24-31.log]
[testng] 01:24:31,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29d92183 - End of configuration.
[testng] [2024-07-18 01:24:31,293] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 01:24:31,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:24:31,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_01-24-31.log]
[testng] 01:24:31,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ee1b698 - End of configuration.
[testng] [2024-07-18 01:24:31,359] [pool-1-thread-6] Initializing /data/venu/VENU02.TIF:
[testng] 01:24:31,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:24:31,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_01-24-31.log]
[testng] 01:24:31,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d6a79f0 - End of configuration.
[testng] [2024-07-18 01:24:31,443] [pool-1-thread-5] Initializing /data/venu/VENU_Five.TIF:
[testng] 01:24:31,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:24:31,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_01-24-31.log]
[testng] 01:24:31,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27ddcbb0 - End of configuration.
[testng] [2024-07-18 01:24:31,481] [pool-1-thread-4] Initializing /data/venu/VENU01.TIF:
[testng] 01:24:31,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:24:31,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_01-24-31.log]
[testng] 01:24:31,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e783f01 - End of configuration.
[testng] [2024-07-18 01:24:31,539] [pool-1-thread-3] Initializing /data/venu/VENU_Six.TIF:
[testng] 01:24:31,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:24:31,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_01-24-31.log]
[testng] 01:24:31,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d8fb488 - End of configuration.
[testng] [2024-07-18 01:24:31,583] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF:
[testng] 01:24:31,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:24:31,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:24:31,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_01-24-31.log]
[testng] 01:24:31,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a15ad58 - End of configuration.
[testng] [2024-07-18 01:24:34,394] [pool-1-thread-9] Initializing /data/venu/VENU03.TIF:
[testng] [2024-07-18 01:24:34,434] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF:
[testng] [2024-07-18 01:24:34,459] [pool-1-thread-8] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] [2024-07-18 01:24:34,533] [pool-1-thread-10] Initializing /data/venu/VENU.TIF:
[testng] [2024-07-18 01:24:34,569] [pool-1-thread-4] Initializing /data/venu/VENU03.IMG:
[testng] [2024-07-18 01:24:34,598] [pool-1-thread-6] Initializing /data/venu/VENU_Seven.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS