Started by upstream project "BIOFORMATS-test-repo" build number 124
originally caused by:
Started by upstream project "Trigger" build number 141
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins779451406667688792.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19376_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:30:52,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:30:52,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:30:52,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:52,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:30:52,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:30:52,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:30:52,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:30:52,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:52,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:30:52,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:30:52,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:30:52,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:30:52,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:30:52,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:30:52,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:30:52,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:30:52,789 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:30:52,789 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:30:52,789 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:30:52,789 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:30:52,789 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:30:52,790 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:30:52,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 238 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-18 01:30:52,800] [main] java.version = 21
[testng] 01:30:52,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:30:52,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:52,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_01-30-52.log]
[testng] 01:30:52,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-18 01:30:52,853] [main] testng.directory = /data
[testng] [2024-07-18 01:30:52,853] [main] testng.configDirectory = /config
[testng] [2024-07-18 01:30:52,863] [main] testng.multiplier = 1.0
[testng] [2024-07-18 01:30:52,863] [main] testng.in-memory = false
[testng] [2024-07-18 01:30:52,864] [main] testng.allow-missing = false
[testng] [2024-07-18 01:30:52,864] [main] user.language = en
[testng] [2024-07-18 01:30:52,864] [main] user.country = ${user.country}
[testng] [2024-07-18 01:30:52,864] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-18 01:30:53,316] [main] ----------------------------------------
[testng] [2024-07-18 01:30:53,317] [main] Total files: 25
[testng] [2024-07-18 01:30:53,317] [main] Scan time: 0.452 s (18 ms/file)
[testng] [2024-07-18 01:30:53,317] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-18 01:30:55,594] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:30:55,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:30:55,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_01-30-55.log]
[testng] 01:30:55,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35977b8b - End of configuration.
[testng] [2024-07-18 01:30:55,632] [pool-1-thread-12] Initializing /data/misc/planet.png:
[testng] 01:30:55,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:30:55,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_01-30-55.log]
[testng] 01:30:55,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63632b3b - End of configuration.
[testng] [2024-07-18 01:30:55,642] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:30:55,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:30:55,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_01-30-55.log]
[testng] 01:30:55,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2afd0497 - End of configuration.
[testng] [2024-07-18 01:30:55,706] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT:
[testng] 01:30:55,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:30:55,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_01-30-55.log]
[testng] 01:30:55,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e054f13 - End of configuration.
[testng] [2024-07-18 01:30:55,766] [pool-1-thread-9] Initializing /data/jqd/mire32.pict:
[testng] 01:30:55,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:30:55,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_01-30-55.log]
[testng] 01:30:55,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e4110fc - End of configuration.
[testng] [2024-07-18 01:30:55,819] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:30:55,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:30:55,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_01-30-55.log]
[testng] 01:30:55,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73a3ee15 - End of configuration.
[testng] [2024-07-18 01:30:55,845] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 01:30:55,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:30:55,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_01-30-55.log]
[testng] 01:30:55,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484a66c3 - End of configuration.
[testng] [2024-07-18 01:30:55,982] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:30:55,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:30:55,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:55,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_01-30-55.log]
[testng] 01:30:55,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129d7398 - End of configuration.
[testng] [2024-07-18 01:30:56,226] [pool-1-thread-5] Initializing /data/misc/swlogo.pict:
[testng] 01:30:56,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:30:56,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:56,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_01-30-56.log]
[testng] 01:30:56,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dca131 - End of configuration.
[testng] [2024-07-18 01:30:56,262] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct:
[testng] 01:30:56,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:30:56,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:56,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_01-30-56.log]
[testng] 01:30:56,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@129f7a31 - End of configuration.
[testng] [2024-07-18 01:30:56,302] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:30:56,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:30:56,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:56,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_01-30-56.log]
[testng] 01:30:56,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3a6287 - End of configuration.
[testng] [2024-07-18 01:30:56,639] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT:
[testng] 01:30:56,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:30:56,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:56,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_01-30-56.log]
[testng] 01:30:56,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd19008 - End of configuration.
[testng] [2024-07-18 01:30:58,380] [pool-1-thread-5] Initializing /data/misc/planet2.pict:
[testng] [2024-07-18 01:30:58,435] [pool-1-thread-9] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-07-18 01:30:58,454] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-07-18 01:30:58,472] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-07-18 01:30:58,506] [pool-1-thread-10] Initializing /data/jqd/32bit.pict:
[testng] [2024-07-18 01:30:58,565] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] [2024-07-18 01:30:58,573] [pool-1-thread-2] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-07-18 01:30:59,025] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-07-18 01:30:59,068] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT:
[testng] [2024-07-18 01:30:59,229] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct:
[testng] [2024-07-18 01:30:59,244] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-07-18 01:30:59,320] [pool-1-thread-4] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-07-18 01:30:59,379] [pool-1-thread-2] Initializing /data/misc/planet.pict:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS