Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins17888033707812216754.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19452_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:18:55,699 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:18:55,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:18:55,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:55,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:55,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:18:55,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:18:55,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:18:55,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:55,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:55,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:18:55,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:18:55,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:18:55,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:55,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:55,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:55,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:55,927 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:55,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:55,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:55,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:55,928 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:18:55,929 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:18:55,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 225 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 02:18:55,938] [main] java.version = 21 [testng] 02:18:55,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:55,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:55,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_02-18-55.log] [testng] 02:18:55,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 02:18:55,988] [main] testng.directory = /data [testng] [2024-07-18 02:18:55,988] [main] testng.configDirectory = /config [testng] [2024-07-18 02:18:55,997] [main] testng.multiplier = 1.0 [testng] [2024-07-18 02:18:55,998] [main] testng.in-memory = false [testng] [2024-07-18 02:18:55,998] [main] testng.allow-missing = false [testng] [2024-07-18 02:18:55,998] [main] user.language = en [testng] [2024-07-18 02:18:55,998] [main] user.country = ${user.country} [testng] [2024-07-18 02:18:55,998] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 02:18:56,373] [main] ---------------------------------------- [testng] [2024-07-18 02:18:56,373] [main] Total files: 21 [testng] [2024-07-18 02:18:56,373] [main] Scan time: 0.375 s (17 ms/file) [testng] [2024-07-18 02:18:56,374] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 02:18:57,511] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] 02:18:57,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:57,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_02-18-57.log] [testng] 02:18:57,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f7868e3 - End of configuration. [testng] [2024-07-18 02:18:57,526] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:18:57,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:57,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_02-18-57.log] [testng] 02:18:57,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102794cf - End of configuration. [testng] [2024-07-18 02:18:57,533] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: [testng] 02:18:57,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:57,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_02-18-57.log] [testng] 02:18:57,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19555bfb - End of configuration. [testng] [2024-07-18 02:18:57,546] [pool-1-thread-10] Initializing /data/samples/william_wong04.png: [testng] 02:18:57,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:57,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_02-18-57.log] [testng] 02:18:57,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb6f6c9 - End of configuration. [testng] [2024-07-18 02:18:57,555] [pool-1-thread-9] Initializing /data/samples/Matrix.png: [testng] 02:18:57,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:57,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_02-18-57.log] [testng] 02:18:57,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3416fffa - End of configuration. [testng] [2024-07-18 02:18:57,562] [pool-1-thread-8] Initializing /data/samples/orbit.png: [testng] 02:18:57,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:57,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_02-18-57.log] [testng] 02:18:57,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aae360 - End of configuration. [testng] [2024-07-18 02:18:57,568] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 02:18:57,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:57,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_02-18-57.log] [testng] 02:18:57,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48f61b3 - End of configuration. [testng] [2024-07-18 02:18:57,578] [pool-1-thread-6] Initializing /data/samples/william_wong02.png: [testng] 02:18:57,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:57,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_02-18-57.log] [testng] 02:18:57,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e384ad - End of configuration. [testng] [2024-07-18 02:18:57,588] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] 02:18:57,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:57,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_02-18-57.log] [testng] 02:18:57,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bd6a55b - End of configuration. [testng] [2024-07-18 02:18:57,631] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] 02:18:57,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:57,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_02-18-57.log] [testng] 02:18:57,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92da8c3 - End of configuration. [testng] [2024-07-18 02:18:57,639] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] 02:18:57,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:57,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_02-18-57.log] [testng] 02:18:57,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db5951d - End of configuration. [testng] [2024-07-18 02:18:57,645] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 02:18:57,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:57,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_02-18-57.log] [testng] 02:18:57,647 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79ee3e9d - End of configuration. [testng] [2024-07-18 02:18:58,853] [pool-1-thread-12] Initializing /data/samples/phug_logo.png: [testng] [2024-07-18 02:18:58,858] [pool-1-thread-1] Initializing /data/qa-7473/x.png: [testng] [2024-07-18 02:18:58,863] [pool-1-thread-2] Initializing /data/samples/atom.png: [testng] [2024-07-18 02:18:59,237] [pool-1-thread-9] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-07-18 02:18:59,243] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [2024-07-18 02:18:59,250] [pool-1-thread-8] Initializing /data/samples/StarV838.png: [testng] [2024-07-18 02:18:59,259] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-07-18 02:18:59,264] [pool-1-thread-6] Initializing /data/colin/test.sfstdge.png: [testng] [2024-07-18 02:18:59,267] [pool-1-thread-7] Initializing /data/samples/Sun.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS