Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9411976478141744537.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19458_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:24:58,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:24:58,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:24:58,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:24:58,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:24:58,328 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:24:58,328 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:24:58,328 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:24:58,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:24:58,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 02:24:58,330 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 02:24:58,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 660 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 02:24:58,342] [main] java.version = 21 [testng] 02:24:58,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:24:58,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:58,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_02-24-58.log] [testng] 02:24:58,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 02:24:58,701] [main] testng.directory = /data [testng] [2024-07-18 02:24:58,702] [main] testng.configDirectory = /config [testng] [2024-07-18 02:24:58,777] [main] testng.multiplier = 1.0 [testng] [2024-07-18 02:24:58,778] [main] testng.in-memory = false [testng] [2024-07-18 02:24:58,778] [main] testng.allow-missing = false [testng] [2024-07-18 02:24:58,778] [main] user.language = en [testng] [2024-07-18 02:24:58,778] [main] user.country = ${user.country} [testng] [2024-07-18 02:24:58,778] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 02:24:59,992] [main] ---------------------------------------- [testng] [2024-07-18 02:24:59,992] [main] Total files: 18 [testng] [2024-07-18 02:24:59,992] [main] Scan time: 1.213 s (67 ms/file) [testng] [2024-07-18 02:24:59,993] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 02:25:02,192] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:25:02,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:02,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_02-25-02.log] [testng] 02:25:02,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11515772 - End of configuration. [testng] [2024-07-18 02:25:02,295] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:25:02,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:02,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_02-25-02.log] [testng] 02:25:02,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49007360 - End of configuration. [testng] [2024-07-18 02:25:02,366] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:25:02,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:02,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_02-25-02.log] [testng] 02:25:02,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207ef590 - End of configuration. [testng] [2024-07-18 02:25:02,436] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:25:02,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:02,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_02-25-02.log] [testng] 02:25:02,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb3d64e - End of configuration. [testng] [2024-07-18 02:25:02,496] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 02:25:02,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:02,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_02-25-02.log] [testng] 02:25:02,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776f570e - End of configuration. [testng] [2024-07-18 02:25:02,593] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:25:02,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:02,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_02-25-02.log] [testng] 02:25:02,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6079e00b - End of configuration. [testng] [2024-07-18 02:25:02,709] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] 02:25:02,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:02,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_02-25-02.log] [testng] 02:25:02,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@decaa1c - End of configuration. [testng] [2024-07-18 02:25:02,962] [pool-1-thread-6] Initializing /data/ascb/607x.psd: [testng] 02:25:02,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:02,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:02,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_02-25-02.log] [testng] 02:25:02,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132f6115 - End of configuration. [testng] [2024-07-18 02:25:03,163] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:25:03,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:03,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_02-25-03.log] [testng] 02:25:03,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5990b9 - End of configuration. [testng] [2024-07-18 02:25:03,342] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 02:25:03,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:03,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_02-25-03.log] [testng] 02:25:03,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d88b07 - End of configuration. [testng] [2024-07-18 02:25:03,405] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:25:03,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:03,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_02-25-03.log] [testng] 02:25:03,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32560d26 - End of configuration. [testng] [2024-07-18 02:25:03,482] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] 02:25:03,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:03,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_02-25-03.log] [testng] 02:25:03,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71162a61 - End of configuration. [testng] [2024-07-18 02:25:11,523] [pool-1-thread-10] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-07-18 02:25:11,573] [pool-1-thread-7] Initializing /data/cris/house.tif: [testng] [2024-07-18 02:25:11,744] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-07-18 02:25:11,788] [pool-1-thread-1] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-07-18 02:25:11,800] [pool-1-thread-11] Initializing /data/misc/smilie.psd: [testng] [2024-07-18 02:25:12,205] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 52 seconds Finished: SUCCESS