Started by upstream project "BIOFORMATS-test-repo" build number 125
originally caused by:
Started by upstream project "Trigger" build number 142
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10661049631874571860.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19561_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:47:19,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:47:19,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:47:19,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:47:19,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:47:19,429 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:47:19,429 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:47:19,429 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:47:19,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:47:19,430 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:47:19,431 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:47:19,431 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 445 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-19 01:47:19,442] [main] java.version = 1.8.0_342
[testng] 01:47:19,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:47:19,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:19,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-19_01-47-19.log]
[testng] 01:47:19,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-19 01:47:19,503] [main] testng.directory = /data
[testng] [2024-07-19 01:47:19,503] [main] testng.configDirectory = /config
[testng] [2024-07-19 01:47:19,517] [main] testng.multiplier = 1.0
[testng] [2024-07-19 01:47:19,518] [main] testng.in-memory = false
[testng] [2024-07-19 01:47:19,518] [main] testng.allow-missing = false
[testng] [2024-07-19 01:47:19,518] [main] user.language = en
[testng] [2024-07-19 01:47:19,518] [main] user.country = ${user.country}
[testng] [2024-07-19 01:47:19,518] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-19 01:47:19,962] [main] ----------------------------------------
[testng] [2024-07-19 01:47:19,962] [main] Total files: 15
[testng] [2024-07-19 01:47:19,962] [main] Scan time: 0.444 s (29 ms/file)
[testng] [2024-07-19 01:47:19,962] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-19 01:47:27,053] [pool-1-thread-1] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 01:47:27,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:47:27,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:27,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-19_01-47-27.log]
[testng] 01:47:27,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c1f9ca9 - End of configuration.
[testng] [2024-07-19 01:47:27,987] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc:
[testng] 01:47:27,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:47:27,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:27,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-19_01-47-27.log]
[testng] 01:47:27,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566f7fdc - End of configuration.
[testng] [2024-07-19 01:47:28,006] [pool-1-thread-11] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc:
[testng] 01:47:28,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:47:28,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:28,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-19_01-47-28.log]
[testng] 01:47:28,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dea92f7 - End of configuration.
[testng] [2024-07-19 01:47:30,527] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 01:47:30,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:47:30,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-19_01-47-30.log]
[testng] 01:47:30,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10c74431 - End of configuration.
[testng] [2024-07-19 01:47:30,615] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc:
[testng] 01:47:30,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:47:30,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-19_01-47-30.log]
[testng] 01:47:30,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c3abd5 - End of configuration.
[testng] [2024-07-19 01:47:30,646] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 01:47:30,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:47:30,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-19_01-47-30.log]
[testng] 01:47:30,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b0e8ad - End of configuration.
[testng] [2024-07-19 01:47:30,681] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 01:47:30,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:47:30,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-19_01-47-30.log]
[testng] 01:47:30,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6557a0 - End of configuration.
[testng] [2024-07-19 01:47:30,697] [pool-1-thread-6] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 01:47:30,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:47:30,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-19_01-47-30.log]
[testng] 01:47:30,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4be4b611 - End of configuration.
[testng] [2024-07-19 01:47:30,784] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 01:47:30,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:47:30,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-19_01-47-30.log]
[testng] 01:47:30,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153767ac - End of configuration.
[testng] [2024-07-19 01:47:30,798] [pool-1-thread-4] Initializing /data/daren/test_32bit_float.mnc:
[testng] 01:47:30,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:47:30,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:30,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-19_01-47-30.log]
[testng] 01:47:30,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b1cca7f - End of configuration.
[testng] [2024-07-19 01:47:31,101] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc:
[testng] 01:47:31,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:47:31,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:31,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-19_01-47-31.log]
[testng] 01:47:31,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@679f4115 - End of configuration.
[testng] [2024-07-19 01:47:31,113] [pool-1-thread-2] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc:
[testng] 01:47:31,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:47:31,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:47:31,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-19_01-47-31.log]
[testng] 01:47:31,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1304e4b4 - End of configuration.
BUILD SUCCESSFUL
Total time: 37 seconds
Finished: SUCCESS