Started by upstream project "BIOFORMATS-test-repo" build number 125
originally caused by:
Started by upstream project "Trigger" build number 142
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2660862325911728033.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19623_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:35:21,814 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:35:21,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:35:21,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:35:21,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:35:21,817 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:35:21,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:35:21,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:35:21,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:35:21,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:35:21,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:35:21,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:35:21,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:35:22,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:35:22,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:35:22,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:35:22,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:35:22,129 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:35:22,129 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:35:22,129 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:35:22,130 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:35:22,130 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:35:22,131 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:35:22,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 312 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-19 02:35:22,141] [main] java.version = 1.8.0_342
[testng] 02:35:22,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:35:22,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:22,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-19_02-35-22.log]
[testng] 02:35:22,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-19 02:35:22,197] [main] testng.directory = /data
[testng] [2024-07-19 02:35:22,197] [main] testng.configDirectory = /config
[testng] [2024-07-19 02:35:22,210] [main] testng.multiplier = 1.0
[testng] [2024-07-19 02:35:22,211] [main] testng.in-memory = false
[testng] [2024-07-19 02:35:22,211] [main] testng.allow-missing = false
[testng] [2024-07-19 02:35:22,211] [main] user.language = en
[testng] [2024-07-19 02:35:22,211] [main] user.country = ${user.country}
[testng] [2024-07-19 02:35:22,211] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-19 02:35:23,074] [main] ----------------------------------------
[testng] [2024-07-19 02:35:23,074] [main] Total files: 32
[testng] [2024-07-19 02:35:23,074] [main] Scan time: 0.863 s (26 ms/file)
[testng] [2024-07-19 02:35:23,074] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-19 02:35:26,684] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc:
[testng] 02:35:26,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:35:26,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-19_02-35-26.log]
[testng] 02:35:26,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735b2828 - End of configuration.
[testng] [2024-07-19 02:35:26,709] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg:
[testng] 02:35:26,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:35:26,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-19_02-35-26.log]
[testng] 02:35:26,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e1e7f08 - End of configuration.
[testng] [2024-07-19 02:35:26,727] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] 02:35:26,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:35:26,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-19_02-35-26.log]
[testng] 02:35:26,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28977dd8 - End of configuration.
[testng] [2024-07-19 02:35:26,791] [pool-1-thread-10] Initializing /data/geert/good example1.1sc:
[testng] 02:35:26,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:35:26,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-19_02-35-26.log]
[testng] 02:35:26,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2f5d6 - End of configuration.
[testng] [2024-07-19 02:35:26,842] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc:
[testng] 02:35:26,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:35:26,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-19_02-35-26.log]
[testng] 02:35:26,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661e893c - End of configuration.
[testng] [2024-07-19 02:35:26,889] [pool-1-thread-8] Initializing /data/david/Opened in imageJ.tiff:
[testng] 02:35:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:35:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-19_02-35-26.log]
[testng] 02:35:26,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5a12e0 - End of configuration.
[testng] [2024-07-19 02:35:26,953] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] 02:35:26,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:35:26,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:26,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-19_02-35-26.log]
[testng] 02:35:26,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bbd91a8 - End of configuration.
[testng] [2024-07-19 02:35:27,053] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc:
[testng] 02:35:27,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:35:27,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:27,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-19_02-35-27.log]
[testng] 02:35:27,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c60221d - End of configuration.
[testng] [2024-07-19 02:35:27,115] [pool-1-thread-5] Initializing /data/keith/test2.1sc:
[testng] 02:35:27,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:35:27,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:27,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-19_02-35-27.log]
[testng] 02:35:27,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36e4e8c - End of configuration.
[testng] [2024-07-19 02:35:27,136] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] 02:35:27,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:35:27,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:27,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-19_02-35-27.log]
[testng] 02:35:27,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e474da9 - End of configuration.
[testng] [2024-07-19 02:35:27,175] [pool-1-thread-3] Initializing /data/keith/pg020410saur3.1sc:
[testng] 02:35:27,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:35:27,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:27,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-19_02-35-27.log]
[testng] 02:35:27,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77f6dc58 - End of configuration.
[testng] [2024-07-19 02:35:27,193] [pool-1-thread-2] Initializing /data/keith/test.1sc:
[testng] 02:35:27,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:35:27,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:35:27,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-19_02-35-27.log]
[testng] 02:35:27,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62304bd2 - End of configuration.
[testng] [2024-07-19 02:35:29,107] [pool-1-thread-3] Initializing /data/adrian/test_img.1sc:
[testng] [2024-07-19 02:35:29,140] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2024-07-19 02:35:29,196] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc:
[testng] [2024-07-19 02:35:29,224] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] [2024-07-19 02:35:29,358] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-07-19 02:35:29,383] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] [2024-07-19 02:35:29,412] [pool-1-thread-12] Initializing /data/qa-29459/bad.1sc:
[testng] [2024-07-19 02:35:29,467] [pool-1-thread-9] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] [2024-07-19 02:35:29,511] [pool-1-thread-4] Initializing /data/geert/bad example1.1sc:
[testng] [2024-07-19 02:35:29,776] [pool-1-thread-7] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-07-19 02:35:29,788] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2024-07-19 02:35:29,851] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg:
[testng] [2024-07-19 02:35:30,436] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc:
[testng] [2024-07-19 02:35:30,618] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc:
[testng] [2024-07-19 02:35:31,108] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-07-19 02:35:31,176] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2024-07-19 02:35:31,233] [pool-1-thread-6] Initializing /data/qa-29469/good.1sc:
[testng] [2024-07-19 02:35:31,402] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] [2024-07-19 02:35:31,435] [pool-1-thread-12] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] [2024-07-19 02:35:31,463] [pool-1-thread-1] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS