Started by upstream project "BIOFORMATS-test-repo" build number 126
originally caused by:
Started by upstream project "Trigger" build number 143
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5809855712525151773.sh
+ '[' obf = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19805_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 02:43:02,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:43:02,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 02:43:02,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:02,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:43:02,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:43:02,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:43:02,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:43:02,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:02,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:43:02,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:43:02,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:43:02,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:43:03,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:43:03,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:43:03,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:43:03,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:43:03,075 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:43:03,075 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:43:03,075 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:43:03,076 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:43:03,076 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 02:43:03,077 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 02:43:03,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-20 02:43:03,086] [main] java.version = 11.0.16
[testng] 02:43:03,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:43:03,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:03,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-20_02-43-03.log]
[testng] 02:43:03,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-20 02:43:03,137] [main] testng.directory = /data
[testng] [2024-07-20 02:43:03,137] [main] testng.configDirectory = /config
[testng] [2024-07-20 02:43:03,147] [main] testng.multiplier = 1.0
[testng] [2024-07-20 02:43:03,148] [main] testng.in-memory = false
[testng] [2024-07-20 02:43:03,149] [main] testng.allow-missing = false
[testng] [2024-07-20 02:43:03,149] [main] user.language = en
[testng] [2024-07-20 02:43:03,149] [main] user.country = ${user.country}
[testng] [2024-07-20 02:43:03,149] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-20 02:43:05,023] [main] ----------------------------------------
[testng] [2024-07-20 02:43:05,023] [main] Total files: 12
[testng] [2024-07-20 02:43:05,023] [main] Scan time: 1.874 s (156 ms/file)
[testng] [2024-07-20 02:43:05,024] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-20 02:43:10,974] [pool-1-thread-1] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf:
[testng] 02:43:10,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:43:10,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:10,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-20_02-43-10.log]
[testng] 02:43:10,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69618e32 - End of configuration.
[testng] [2024-07-20 02:43:11,248] [pool-1-thread-11] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf:
[testng] 02:43:11,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:43:11,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:11,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-20_02-43-11.log]
[testng] 02:43:11,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b3a5f1d - End of configuration.
[testng] [2024-07-20 02:43:11,874] [pool-1-thread-10] Initializing /data/bjoernthiel/20191106__zstack.msr:
[testng] 02:43:11,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:43:11,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:11,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-20_02-43-11.log]
[testng] 02:43:11,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764d49b9 - End of configuration.
[testng] [2024-07-20 02:43:11,998] [pool-1-thread-9] Initializing /data/qa-27923/test.obf:
[testng] 02:43:11,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:43:11,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:11,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-20_02-43-11.log]
[testng] 02:43:11,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72c3b55d - End of configuration.
[testng] [2024-07-20 02:43:12,063] [pool-1-thread-8] Initializing /data/qa-16895/Measurement1.msr:
[testng] 02:43:12,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:43:12,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:12,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-20_02-43-12.log]
[testng] 02:43:12,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5889013b - End of configuration.
[testng] [2024-07-20 02:43:12,130] [pool-1-thread-7] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr:
[testng] 02:43:12,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:43:12,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:12,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-20_02-43-12.log]
[testng] 02:43:12,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@519c3c17 - End of configuration.
[testng] [2024-07-20 02:43:12,178] [pool-1-thread-6] Initializing /data/qa-17111/before 1.msr:
[testng] 02:43:12,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:43:12,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:12,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-20_02-43-12.log]
[testng] 02:43:12,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a903c79 - End of configuration.
[testng] [2024-07-20 02:43:13,092] [pool-1-thread-5] Initializing /data/public/ngladitz/v6/test-v6.obf:
[testng] 02:43:13,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:43:13,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:13,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-20_02-43-13.log]
[testng] 02:43:13,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4178a1 - End of configuration.
[testng] [2024-07-20 02:43:13,462] [pool-1-thread-4] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr:
[testng] 02:43:13,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:43:13,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:13,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-20_02-43-13.log]
[testng] 02:43:13,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17eb491c - End of configuration.
[testng] [2024-07-20 02:43:13,518] [pool-1-thread-3] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf:
[testng] 02:43:13,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:43:13,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:13,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-20_02-43-13.log]
[testng] 02:43:13,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378272c5 - End of configuration.
[testng] [2024-07-20 02:43:13,622] [pool-1-thread-2] Initializing /data/public/ngladitz/v4/test-v4.obf:
[testng] 02:43:13,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:43:13,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:43:13,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-20_02-43-13.log]
[testng] 02:43:13,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5879f041 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 seconds
Finished: SUCCESS