Started by upstream project "BIOFORMATS-test-repo" build number 127
originally caused by:
Started by upstream project "Trigger" build number 144
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13657446564850631880.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_19906_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:05:00,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:05:00,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:05:00,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:05:00,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:05:00,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:05:00,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:05:00,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:05:00,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:05:00,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:05:00,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:05:00,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:05:00,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:05:00,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:05:00,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:05:00,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:05:00,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:05:00,423 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:05:00,423 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:05:00,423 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:05:00,424 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:05:00,425 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:05:00,426 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:05:00,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 330 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-21 02:05:00,436] [main] java.version = 17.0.2
[testng] 02:05:00,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:05:00,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:00,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-21_02-05-00.log]
[testng] 02:05:00,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-07-21 02:05:00,483] [main] testng.directory = /data
[testng] [2024-07-21 02:05:00,483] [main] testng.configDirectory = /config
[testng] [2024-07-21 02:05:00,491] [main] testng.multiplier = 1.0
[testng] [2024-07-21 02:05:00,492] [main] testng.in-memory = false
[testng] [2024-07-21 02:05:00,492] [main] testng.allow-missing = false
[testng] [2024-07-21 02:05:00,492] [main] user.language = en
[testng] [2024-07-21 02:05:00,493] [main] user.country = ${user.country}
[testng] [2024-07-21 02:05:00,493] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-21 02:05:10,920] [main] ----------------------------------------
[testng] [2024-07-21 02:05:10,920] [main] Total files: 268
[testng] [2024-07-21 02:05:10,920] [main] Scan time: 10.427 s (38 ms/file)
[testng] [2024-07-21 02:05:10,920] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-21 02:05:20,715] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] 02:05:20,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:05:20,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-21_02-05-20.log]
[testng] 02:05:20,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c25e15e - End of configuration.
[testng] [2024-07-21 02:05:20,773] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] 02:05:20,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:05:20,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-21_02-05-20.log]
[testng] 02:05:20,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8babce - End of configuration.
[testng] [2024-07-21 02:05:20,789] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 02:05:20,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:05:20,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-21_02-05-20.log]
[testng] 02:05:20,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506469a1 - End of configuration.
[testng] [2024-07-21 02:05:20,806] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] 02:05:20,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:05:20,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-21_02-05-20.log]
[testng] 02:05:20,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d5ffba - End of configuration.
[testng] [2024-07-21 02:05:20,840] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] 02:05:20,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:05:20,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-21_02-05-20.log]
[testng] 02:05:20,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ed671a0 - End of configuration.
[testng] [2024-07-21 02:05:20,854] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] 02:05:20,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:05:20,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-21_02-05-20.log]
[testng] 02:05:20,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649a8dd4 - End of configuration.
[testng] [2024-07-21 02:05:20,865] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA:
[testng] 02:05:20,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:05:20,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-21_02-05-20.log]
[testng] 02:05:20,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4392ffdd - End of configuration.
[testng] [2024-07-21 02:05:20,884] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] 02:05:20,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:05:20,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-21_02-05-20.log]
[testng] 02:05:20,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e18eba - End of configuration.
[testng] [2024-07-21 02:05:20,897] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng] 02:05:20,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:05:20,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:20,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-21_02-05-20.log]
[testng] 02:05:20,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1be02b12 - End of configuration.
[testng] [2024-07-21 02:05:21,023] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] 02:05:21,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:05:21,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:21,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-21_02-05-21.log]
[testng] 02:05:21,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ebac067 - End of configuration.
[testng] [2024-07-21 02:05:21,040] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] 02:05:21,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:05:21,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:21,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-21_02-05-21.log]
[testng] 02:05:21,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@461d68d6 - End of configuration.
[testng] [2024-07-21 02:05:21,067] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] 02:05:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:05:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:05:21,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-21_02-05-21.log]
[testng] 02:05:21,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b38072f - End of configuration.
[testng] [2024-07-21 02:05:22,887] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-07-21 02:05:22,910] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-07-21 02:05:22,919] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-07-21 02:05:22,940] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-07-21 02:05:22,979] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-07-21 02:05:22,988] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-07-21 02:05:22,998] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-07-21 02:05:23,028] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] [2024-07-21 02:05:23,324] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-07-21 02:05:23,375] [pool-1-thread-3] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-07-21 02:05:23,442] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-07-21 02:05:23,502] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-07-21 02:05:23,733] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-07-21 02:05:23,770] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-07-21 02:05:23,813] [pool-1-thread-5] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-07-21 02:05:23,927] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] [2024-07-21 02:05:24,020] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-07-21 02:05:24,032] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-07-21 02:05:24,055] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-07-21 02:05:24,102] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-07-21 02:05:24,337] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-07-21 02:05:24,542] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-07-21 02:05:24,593] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-07-21 02:05:24,618] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-07-21 02:05:24,633] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-07-21 02:05:24,679] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-07-21 02:05:24,789] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-07-21 02:05:24,826] [pool-1-thread-11] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-07-21 02:05:24,869] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-07-21 02:05:24,911] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-07-21 02:05:24,930] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-07-21 02:05:24,967] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-07-21 02:05:25,062] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] [2024-07-21 02:05:25,113] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-07-21 02:05:25,124] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-07-21 02:05:25,143] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-07-21 02:05:25,181] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-07-21 02:05:25,310] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s:
[testng] [2024-07-21 02:05:25,395] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-07-21 02:05:25,456] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-07-21 02:05:25,471] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-07-21 02:05:25,561] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-07-21 02:05:25,570] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-07-21 02:05:25,600] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-07-21 02:05:25,688] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-07-21 02:05:25,821] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] [2024-07-21 02:05:25,887] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] [2024-07-21 02:05:25,943] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-07-21 02:05:25,994] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] [2024-07-21 02:05:26,055] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-07-21 02:05:26,073] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-07-21 02:05:26,150] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits:
[testng] [2024-07-21 02:05:26,198] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-07-21 02:05:26,229] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] [2024-07-21 02:05:26,243] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-07-21 02:05:26,312] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-07-21 02:05:26,395] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-07-21 02:05:26,433] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] [2024-07-21 02:05:26,503] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-07-21 02:05:26,511] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-07-21 02:05:26,542] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-07-21 02:05:26,566] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-07-21 02:05:26,630] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-07-21 02:05:26,708] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-07-21 02:05:26,756] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-07-21 02:05:26,785] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-07-21 02:05:26,871] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-07-21 02:05:26,969] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-07-21 02:05:27,079] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-07-21 02:05:27,098] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-07-21 02:05:27,103] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-07-21 02:05:27,225] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-07-21 02:05:27,284] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-07-21 02:05:27,306] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-07-21 02:05:27,314] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-07-21 02:05:27,325] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-07-21 02:05:27,340] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] [2024-07-21 02:05:27,406] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-07-21 02:05:27,416] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-07-21 02:05:27,458] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-07-21 02:05:27,467] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-07-21 02:05:27,694] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-07-21 02:05:27,724] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-07-21 02:05:27,754] [pool-1-thread-11] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-07-21 02:05:27,775] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-07-21 02:05:27,790] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-07-21 02:05:27,897] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-07-21 02:05:27,910] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-07-21 02:05:27,962] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-07-21 02:05:28,004] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-07-21 02:05:28,089] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-07-21 02:05:28,126] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-07-21 02:05:28,214] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-07-21 02:05:28,309] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-07-21 02:05:28,326] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-07-21 02:05:28,375] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-07-21 02:05:28,417] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-07-21 02:05:28,485] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-07-21 02:05:28,521] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-07-21 02:05:28,540] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-07-21 02:05:28,577] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] [2024-07-21 02:05:28,630] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-07-21 02:05:28,659] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-07-21 02:05:28,682] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-07-21 02:05:28,722] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-07-21 02:05:28,788] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-07-21 02:05:28,823] [pool-1-thread-5] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-07-21 02:05:28,864] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-07-21 02:05:28,896] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-07-21 02:05:28,926] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-07-21 02:05:28,958] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-07-21 02:05:29,065] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-07-21 02:05:29,127] [pool-1-thread-8] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-07-21 02:05:29,163] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-07-21 02:05:29,185] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] [2024-07-21 02:05:29,201] [pool-1-thread-12] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-07-21 02:05:29,227] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-07-21 02:05:29,249] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-07-21 02:05:29,345] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-07-21 02:05:29,421] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-07-21 02:05:29,445] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-07-21 02:05:29,514] [pool-1-thread-5] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-07-21 02:05:29,542] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-07-21 02:05:29,553] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-07-21 02:05:29,608] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-07-21 02:05:29,679] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-07-21 02:05:29,781] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-07-21 02:05:29,882] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-07-21 02:05:29,902] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-07-21 02:05:29,978] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-07-21 02:05:30,012] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-07-21 02:05:30,031] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] [2024-07-21 02:05:30,083] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-07-21 02:05:30,120] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-07-21 02:05:30,324] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] [2024-07-21 02:05:30,390] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-07-21 02:05:30,411] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-07-21 02:05:30,427] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-07-21 02:05:30,444] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-07-21 02:05:30,542] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-07-21 02:05:30,564] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-07-21 02:05:30,602] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-07-21 02:05:30,723] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-07-21 02:05:30,764] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-07-21 02:05:30,792] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-07-21 02:05:30,806] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-07-21 02:05:30,855] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-07-21 02:05:30,868] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 39 seconds
Finished: SUCCESS