Started by upstream project "BIOFORMATS-test-repo" build number 128 originally caused by: Started by upstream project "Trigger" build number 145 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1633366620789446322.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20006_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:56,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:56,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:56,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:56,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:56,958 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:56,958 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:56,958 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:56,959 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:56,959 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:23:56,960 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:23:56,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 423 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 01:23:56,974] [main] java.version = 1.8.0_342 [testng] 01:23:56,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:56,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:57,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_01-23-57.log] [testng] 01:23:57,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 01:23:57,050] [main] testng.directory = /data [testng] [2024-07-22 01:23:57,051] [main] testng.configDirectory = /config [testng] [2024-07-22 01:23:57,068] [main] testng.multiplier = 1.0 [testng] [2024-07-22 01:23:57,069] [main] testng.in-memory = false [testng] [2024-07-22 01:23:57,069] [main] testng.allow-missing = false [testng] [2024-07-22 01:23:57,069] [main] user.language = fr [testng] [2024-07-22 01:23:57,069] [main] user.country = FR [testng] [2024-07-22 01:23:57,069] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 01:23:57,818] [main] ---------------------------------------- [testng] [2024-07-22 01:23:57,818] [main] Total files: 31 [testng] [2024-07-22 01:23:57,818] [main] Scan time: 0.749 s (24 ms/file) [testng] [2024-07-22 01:23:57,818] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 01:23:59,748] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:23:59,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:59,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_01-23-59.log] [testng] 01:23:59,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3320d16a - End of configuration. [testng] [2024-07-22 01:23:59,767] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:23:59,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:59,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_01-23-59.log] [testng] 01:23:59,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4faf0a20 - End of configuration. [testng] [2024-07-22 01:23:59,785] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:23:59,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:59,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_01-23-59.log] [testng] 01:23:59,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6015eb94 - End of configuration. [testng] [2024-07-22 01:23:59,802] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:23:59,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:59,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_01-23-59.log] [testng] 01:23:59,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f3aef6 - End of configuration. [testng] [2024-07-22 01:23:59,816] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:23:59,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:59,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_01-23-59.log] [testng] 01:23:59,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4240aa59 - End of configuration. [testng] [2024-07-22 01:23:59,846] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:23:59,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:59,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_01-23-59.log] [testng] 01:23:59,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35797170 - End of configuration. [testng] [2024-07-22 01:23:59,856] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:23:59,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:59,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_01-23-59.log] [testng] 01:23:59,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a2475a - End of configuration. [testng] [2024-07-22 01:23:59,875] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:23:59,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:59,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_01-23-59.log] [testng] 01:23:59,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dad732b - End of configuration. [testng] [2024-07-22 01:23:59,887] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:23:59,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:59,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_01-23-59.log] [testng] 01:23:59,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36ef0871 - End of configuration. [testng] [2024-07-22 01:23:59,920] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:23:59,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:59,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_01-23-59.log] [testng] 01:23:59,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100458df - End of configuration. [testng] [2024-07-22 01:23:59,938] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:23:59,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:59,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_01-23-59.log] [testng] 01:23:59,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c64db48 - End of configuration. [testng] [2024-07-22 01:23:59,948] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:23:59,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:59,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_01-23-59.log] [testng] 01:23:59,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@179b9cc1 - End of configuration. [testng] [2024-07-22 01:24:01,800] [pool-1-thread-11] Initializing /data/curtis/image1.bmp: [testng] [2024-07-22 01:24:01,804] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-07-22 01:24:01,808] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-07-22 01:24:01,813] [pool-1-thread-3] Initializing /data/curtis/image2.bmp: [testng] [2024-07-22 01:24:01,816] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-07-22 01:24:01,820] [pool-1-thread-2] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-07-22 01:24:01,826] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-07-22 01:24:01,832] [pool-1-thread-7] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-07-22 01:24:02,375] [pool-1-thread-1] Initializing /data/stephane/holo0908.bmp: [testng] [2024-07-22 01:24:02,389] [pool-1-thread-3] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-07-22 01:24:02,401] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-07-22 01:24:03,009] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-07-22 01:24:03,052] [pool-1-thread-12] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-07-22 01:24:03,059] [pool-1-thread-8] Initializing /data/curtis/image4.bmp: [testng] [2024-07-22 01:24:03,062] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-07-22 01:24:03,081] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-07-22 01:24:03,112] [pool-1-thread-11] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-07-22 01:24:03,417] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-07-22 01:24:03,453] [pool-1-thread-12] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 31 seconds Finished: SUCCESS