Started by upstream project "BIOFORMATS-test-repo" build number 128
originally caused by:
Started by upstream project "Trigger" build number 145
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2625678594069635920.sh
+ '[' samples = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20011_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:25:23,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:25:23,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:25:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:25:24,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:25:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:25:24,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:25:24,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:25:24,139 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:25:24,139 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:25:24,140 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:25:24,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 393 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-22 01:25:24,153] [main] java.version = 1.8.0_342
[testng] 01:25:24,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:25:24,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:24,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_01-25-24.log]
[testng] 01:25:24,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-22 01:25:24,220] [main] testng.directory = /data
[testng] [2024-07-22 01:25:24,220] [main] testng.configDirectory = /config
[testng] [2024-07-22 01:25:24,238] [main] testng.multiplier = 1.0
[testng] [2024-07-22 01:25:24,238] [main] testng.in-memory = false
[testng] [2024-07-22 01:25:24,238] [main] testng.allow-missing = false
[testng] [2024-07-22 01:25:24,238] [main] user.language = fr
[testng] [2024-07-22 01:25:24,238] [main] user.country = FR
[testng] [2024-07-22 01:25:24,238] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-22 01:25:45,021] [main] ----------------------------------------
[testng] [2024-07-22 01:25:45,021] [main] Total files: 164
[testng] [2024-07-22 01:25:45,021] [main] Scan time: 20.783 s (126 ms/file)
[testng] [2024-07-22 01:25:45,021] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 59 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-22 01:25:55,458] [pool-1-thread-1] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK:
[testng] 01:25:55,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:25:55,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_01-25-55.log]
[testng] 01:25:55,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70af7b44 - End of configuration.
[testng] [2024-07-22 01:25:55,494] [pool-1-thread-12] Initializing /data/openjpeg/FacadeERROPJW.bmp:
[testng] 01:25:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:25:55,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_01-25-55.log]
[testng] 01:25:55,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53bc9f08 - End of configuration.
[testng] [2024-07-22 01:25:55,511] [pool-1-thread-11] Initializing /data/ome/t0_pos1-0_5x.lsm:
[testng] 01:25:55,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:25:55,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_01-25-55.log]
[testng] 01:25:55,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da46c99 - End of configuration.
[testng] [2024-07-22 01:25:55,575] [pool-1-thread-10] Initializing /data/ome/Adultmidsection.lsm:
[testng] 01:25:55,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:25:55,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_01-25-55.log]
[testng] 01:25:55,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e10fb4f - End of configuration.
[testng] [2024-07-22 01:25:55,619] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk:
[testng] 01:25:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:25:55,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_01-25-55.log]
[testng] 01:25:55,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed6227e - End of configuration.
[testng] [2024-07-22 01:25:55,798] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.bmp:
[testng] 01:25:55,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:25:55,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_01-25-55.log]
[testng] 01:25:55,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc41813 - End of configuration.
[testng] [2024-07-22 01:25:55,811] [pool-1-thread-7] Initializing /data/ome/embryo.lsm:
[testng] 01:25:55,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:25:55,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_01-25-55.log]
[testng] 01:25:55,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e8d43d - End of configuration.
[testng] [2024-07-22 01:25:55,890] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg:
[testng] 01:25:55,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:25:55,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_01-25-55.log]
[testng] 01:25:55,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d1e67be - End of configuration.
[testng] [2024-07-22 01:25:55,929] [pool-1-thread-5] Initializing /data/ome/Cmidmusgfp1.lsm:
[testng] 01:25:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:25:55,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_01-25-55.log]
[testng] 01:25:55,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@715d49ba - End of configuration.
[testng] [2024-07-22 01:25:55,965] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm:
[testng] 01:25:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:25:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_01-25-55.log]
[testng] 01:25:55,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292e76f2 - End of configuration.
[testng] [2024-07-22 01:25:55,976] [pool-1-thread-3] Initializing /data/ome/worm.tiff:
[testng] 01:25:55,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:25:55,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:55,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_01-25-55.log]
[testng] 01:25:55,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c19c39 - End of configuration.
[testng] [2024-07-22 01:25:56,092] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF:
[testng] 01:25:56,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:25:56,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:25:56,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_01-25-56.log]
[testng] 01:25:56,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6894524b - End of configuration.
[testng] [2024-07-22 01:26:00,298] [pool-1-thread-6] Initializing /data/ome/C1.lsm:
[testng] [2024-07-22 01:26:00,319] [pool-1-thread-5] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk:
[testng] [2024-07-22 01:26:00,399] [pool-1-thread-1] Initializing /data/ome/C1midmusnorm.lsm:
[testng] [2024-07-22 01:26:00,414] [pool-1-thread-10] Initializing /data/ome/anusgfpzs.lsm:
[testng] [2024-07-22 01:26:00,436] [pool-1-thread-7] Initializing /data/sdub/sdub.pattern:
[testng] [2024-07-22 01:26:00,556] [pool-1-thread-2] Initializing /data/openjpeg/thumb_Bretagne2.jpg:
[testng] [2024-07-22 01:26:00,565] [pool-1-thread-9] Initializing /data/ome/arwen0205_raw00201.pic:
[testng] [2024-07-22 01:26:00,586] [pool-1-thread-11] Initializing /data/openjpeg/Rome.ppm:
[testng] [2024-07-22 01:26:00,589] [pool-1-thread-4] Initializing /data/openjpeg/Facade.bmp:
[testng] [2024-07-22 01:26:00,831] [pool-1-thread-2] Initializing /data/openjpeg/Bretagne1.bmp:
[testng] [2024-07-22 01:26:00,890] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes2.jp2:
[testng] [2024-07-22 01:26:01,221] [pool-1-thread-12] Initializing /data/openjpeg/Facade.pnm:
[testng] [2024-07-22 01:26:01,297] [pool-1-thread-6] Initializing /data/ome/cb_1.r3d:
[testng] [2024-07-22 01:26:01,409] [pool-1-thread-8] Initializing /data/ome/tiffany.color.tiff:
[testng] [2024-07-22 01:26:01,465] [pool-1-thread-1] Initializing /data/openjpeg/Rome.bmp:
[testng] [2024-07-22 01:26:01,471] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.j2k:
[testng] [2024-07-22 01:26:01,486] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.ppm:
[testng] [2024-07-22 01:26:01,610] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF:
[testng] [2024-07-22 01:26:01,941] [pool-1-thread-1] Initializing /data/ome/compressed2ChZ.lsm:
[testng] [2024-07-22 01:26:02,249] [pool-1-thread-7] Initializing /data/ome/tinyTest.d3d.dv:
[testng] [2024-07-22 01:26:02,255] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes2.ppm:
[testng] [2024-07-22 01:26:02,425] [pool-1-thread-7] Initializing /data/openjpeg/thumb_facade.jpg:
[testng] [2024-07-22 01:26:02,447] [pool-1-thread-8] Initializing /data/openjpeg/Bretagne2.bmp:
[testng] [2024-07-22 01:26:02,755] [pool-1-thread-6] Initializing /data/mouse-kidney/mouse-kidney.lif:
[testng] [2024-07-22 01:26:02,817] [pool-1-thread-5] Initializing /data/ome/210502-0min-NFKB-4.r3d:
[testng] [2024-07-22 01:26:02,833] [pool-1-thread-2] Initializing /data/ome/011B1_Morph.HTD:
[testng] [2024-07-22 01:26:03,416] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes1.j2k:
[testng] [2024-07-22 01:26:03,444] [pool-1-thread-9] Initializing /data/ome/CHOBI_d3d.dv:
[testng] [2024-07-22 01:26:03,625] [pool-1-thread-12] Initializing /data/openjpeg/Rome.jp2:
[testng] [2024-07-22 01:26:03,859] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes2.bmp:
[testng] [2024-07-22 01:26:03,888] [pool-1-thread-9] Initializing /data/ome/C1lowmusgfp.lsm:
[testng] [2024-07-22 01:26:03,954] [pool-1-thread-11] Initializing /data/kidney_TFl/kidney_TFl.pattern:
[testng] [2024-07-22 01:26:04,332] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Cevennes2.jpg:
[testng] [2024-07-22 01:26:04,339] [pool-1-thread-5] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF:
[testng] [2024-07-22 01:26:04,378] [pool-1-thread-6] Initializing /data/openjpeg/thumb_Cevennes1.jpg:
[testng] [2024-07-22 01:26:04,390] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.ppm:
[testng] [2024-07-22 01:26:04,422] [pool-1-thread-9] Initializing /data/ome/n2_plate18_P24_w1.tif:
[testng] [2024-07-22 01:26:04,531] [pool-1-thread-1] Initializing /data/TAABA/TAABA.pattern:
[testng] [2024-07-22 01:26:05,575] [pool-1-thread-4] Initializing /data/ome/t1_pos1-0_5x.lsm:
[testng] [2024-07-22 01:26:05,675] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne2.j2k:
[testng] [2024-07-22 01:26:05,744] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Rome.jpg:
[testng] [2024-07-22 01:26:05,781] [pool-1-thread-11] Initializing /data/ome/Cpharynxzs1.lsm:
[testng] [2024-07-22 01:26:05,816] [pool-1-thread-10] Initializing /data/openjpeg/FacadeERROPJ.bmp:
[testng] [2024-07-22 01:26:05,880] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Bretagne1.jpg:
[testng] [2024-07-22 01:26:05,951] [pool-1-thread-9] Initializing /data/10-31 E1/10-31 E1.tif:
[testng] [2024-07-22 01:26:06,122] [pool-1-thread-5] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK:
[testng] [2024-07-22 01:26:06,266] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Speedway.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 3127, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 25 seconds
Finished: SUCCESS