Started by upstream project "BIOFORMATS-test-repo" build number 128 originally caused by: Started by upstream project "Trigger" build number 145 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1731162599539444692.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20070_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:11:49,150 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:11:49,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:11:49,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:11:49,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:11:49,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:11:49,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:11:49,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:11:49,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:11:49,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:11:49,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:11:49,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:11:49,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:11:49,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:11:49,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:11:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:11:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:11:49,428 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:11:49,428 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:11:49,428 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:11:49,429 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:11:49,429 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:11:49,430 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:11:49,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 02:11:49,442] [main] java.version = 1.8.0_342 [testng] 02:11:49,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:11:49,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:49,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_02-11-49.log] [testng] 02:11:49,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 02:11:49,506] [main] testng.directory = /data [testng] [2024-07-22 02:11:49,506] [main] testng.configDirectory = /config [testng] [2024-07-22 02:11:49,519] [main] testng.multiplier = 1.0 [testng] [2024-07-22 02:11:49,519] [main] testng.in-memory = false [testng] [2024-07-22 02:11:49,520] [main] testng.allow-missing = false [testng] [2024-07-22 02:11:49,520] [main] user.language = fr [testng] [2024-07-22 02:11:49,520] [main] user.country = FR [testng] [2024-07-22 02:11:49,520] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 02:12:00,276] [main] ---------------------------------------- [testng] [2024-07-22 02:12:00,277] [main] Total files: 268 [testng] [2024-07-22 02:12:00,277] [main] Scan time: 10.756 s (40 ms/file) [testng] [2024-07-22 02:12:00,277] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 02:12:12,805] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:12:12,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:12:12,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:12,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_02-12-12.log] [testng] 02:12:12,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4070da06 - End of configuration. [testng] [2024-07-22 02:12:12,862] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:12:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:12:12,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:12,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_02-12-12.log] [testng] 02:12:12,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca64e67 - End of configuration. [testng] [2024-07-22 02:12:12,954] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 02:12:12,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:12:12,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:12,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_02-12-12.log] [testng] 02:12:12,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6309c2d5 - End of configuration. [testng] [2024-07-22 02:12:12,997] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 02:12:12,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:12:12,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:12,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_02-12-12.log] [testng] 02:12:12,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b18a14 - End of configuration. [testng] [2024-07-22 02:12:13,029] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 02:12:13,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:12:13,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_02-12-13.log] [testng] 02:12:13,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301e1070 - End of configuration. [testng] [2024-07-22 02:12:13,043] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:12:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:12:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_02-12-13.log] [testng] 02:12:13,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8499af - End of configuration. [testng] [2024-07-22 02:12:13,072] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] 02:12:13,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:12:13,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_02-12-13.log] [testng] 02:12:13,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f884f71 - End of configuration. [testng] [2024-07-22 02:12:13,168] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] 02:12:13,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:12:13,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_02-12-13.log] [testng] 02:12:13,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec86d26 - End of configuration. [testng] [2024-07-22 02:12:13,224] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] 02:12:13,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:12:13,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_02-12-13.log] [testng] 02:12:13,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2235bf8f - End of configuration. [testng] [2024-07-22 02:12:13,288] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] 02:12:13,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:12:13,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_02-12-13.log] [testng] 02:12:13,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30623da0 - End of configuration. [testng] [2024-07-22 02:12:13,337] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] 02:12:13,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:12:13,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_02-12-13.log] [testng] 02:12:13,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cab143f - End of configuration. [testng] [2024-07-22 02:12:13,388] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] 02:12:13,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:12:13,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:13,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_02-12-13.log] [testng] 02:12:13,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@731c391a - End of configuration. [testng] [2024-07-22 02:12:16,109] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-07-22 02:12:16,137] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-07-22 02:12:16,197] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-07-22 02:12:16,224] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-07-22 02:12:16,250] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-07-22 02:12:16,263] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-07-22 02:12:16,278] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-07-22 02:12:16,362] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-07-22 02:12:16,401] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-07-22 02:12:16,448] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-07-22 02:12:16,473] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-07-22 02:12:16,498] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-07-22 02:12:17,350] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-07-22 02:12:17,368] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-07-22 02:12:17,583] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-07-22 02:12:17,614] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-07-22 02:12:17,643] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-07-22 02:12:17,653] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-07-22 02:12:17,661] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits: [testng] [2024-07-22 02:12:17,671] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-07-22 02:12:17,802] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-07-22 02:12:18,048] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-07-22 02:12:18,100] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-07-22 02:12:18,125] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-07-22 02:12:18,364] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-07-22 02:12:18,521] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-07-22 02:12:18,536] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-07-22 02:12:18,547] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-07-22 02:12:18,657] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-07-22 02:12:18,995] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-07-22 02:12:19,130] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-07-22 02:12:19,179] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2024-07-22 02:12:19,414] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-07-22 02:12:19,510] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-07-22 02:12:19,529] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-07-22 02:12:19,553] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-07-22 02:12:19,635] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-07-22 02:12:19,800] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-07-22 02:12:19,869] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-07-22 02:12:19,884] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-07-22 02:12:19,915] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-07-22 02:12:19,950] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-07-22 02:12:19,989] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-07-22 02:12:20,036] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-07-22 02:12:20,314] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-07-22 02:12:20,369] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-07-22 02:12:20,395] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-07-22 02:12:20,705] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-07-22 02:12:20,763] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-07-22 02:12:20,880] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-07-22 02:12:21,004] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-07-22 02:12:21,180] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-07-22 02:12:21,230] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-07-22 02:12:21,299] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-07-22 02:12:21,332] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-07-22 02:12:21,546] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-07-22 02:12:21,603] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-07-22 02:12:21,716] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-07-22 02:12:21,788] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-07-22 02:12:21,829] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-07-22 02:12:21,926] [pool-1-thread-8] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-07-22 02:12:21,981] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-07-22 02:12:22,012] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-07-22 02:12:22,102] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-07-22 02:12:22,139] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-07-22 02:12:22,331] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-07-22 02:12:22,343] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-07-22 02:12:22,478] [pool-1-thread-12] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-07-22 02:12:22,664] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-07-22 02:12:22,743] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-07-22 02:12:22,748] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-07-22 02:12:22,833] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-07-22 02:12:22,884] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-07-22 02:12:22,902] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-07-22 02:12:22,974] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-07-22 02:12:23,012] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-07-22 02:12:23,204] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-07-22 02:12:23,399] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-07-22 02:12:23,443] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-07-22 02:12:23,495] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-07-22 02:12:23,564] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-07-22 02:12:23,664] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-07-22 02:12:23,747] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-07-22 02:12:23,801] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-07-22 02:12:23,838] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-07-22 02:12:23,856] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-07-22 02:12:23,928] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-07-22 02:12:24,062] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-07-22 02:12:24,190] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-07-22 02:12:24,280] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-07-22 02:12:24,469] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-07-22 02:12:24,557] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-07-22 02:12:24,686] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-07-22 02:12:24,705] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-07-22 02:12:24,722] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-07-22 02:12:24,910] [pool-1-thread-12] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-07-22 02:12:25,007] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-07-22 02:12:25,039] [pool-1-thread-8] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-07-22 02:12:25,069] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-07-22 02:12:25,132] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-07-22 02:12:25,439] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-07-22 02:12:25,480] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-07-22 02:12:25,513] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-07-22 02:12:25,527] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-07-22 02:12:25,631] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-07-22 02:12:25,774] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-07-22 02:12:25,878] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-07-22 02:12:25,912] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-07-22 02:12:26,058] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-07-22 02:12:26,224] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-07-22 02:12:26,245] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-07-22 02:12:26,477] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-07-22 02:12:26,545] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-07-22 02:12:26,821] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-07-22 02:12:26,854] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-07-22 02:12:26,895] [pool-1-thread-12] Initializing /data/steve/FITS/M13.fits: [testng] [2024-07-22 02:12:26,931] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-07-22 02:12:26,989] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-07-22 02:12:27,031] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-07-22 02:12:27,049] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-07-22 02:12:27,258] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-07-22 02:12:27,372] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-07-22 02:12:27,408] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-07-22 02:12:27,446] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-07-22 02:12:27,643] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-07-22 02:12:27,768] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-07-22 02:12:27,817] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-07-22 02:12:27,988] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-07-22 02:12:28,128] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-07-22 02:12:28,200] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-07-22 02:12:28,269] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-07-22 02:12:28,425] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-07-22 02:12:28,588] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-07-22 02:12:28,653] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-07-22 02:12:28,723] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-07-22 02:12:29,005] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-07-22 02:12:29,236] [pool-1-thread-7] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-07-22 02:12:29,424] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-07-22 02:12:29,565] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-07-22 02:12:29,769] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-07-22 02:12:29,818] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-07-22 02:12:29,854] [pool-1-thread-4] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-07-22 02:12:29,898] [pool-1-thread-9] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-07-22 02:12:29,974] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-07-22 02:12:30,125] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-07-22 02:12:30,201] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-07-22 02:12:30,236] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-07-22 02:12:30,433] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 46 seconds Finished: SUCCESS