Started by upstream project "BIOFORMATS-test-repo" build number 128
originally caused by:
Started by upstream project "Trigger" build number 145
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3635107612885430452.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20098_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:19:17,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:19:17,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:19:17,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:19:17,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:19:17,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:19:17,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:19:17,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:19:17,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:19:17,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:19:17,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:19:17,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:19:17,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:19:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:19:17,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:19:17,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:19:17,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:19:17,920 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:19:17,921 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:19:17,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:19:17,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:19:17,921 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:19:17,922 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:19:17,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-22 02:19:17,934] [main] java.version = 1.8.0_342
[testng] 02:19:17,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:19:17,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:17,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_02-19-17.log]
[testng] 02:19:17,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-22 02:19:17,987] [main] testng.directory = /data
[testng] [2024-07-22 02:19:17,987] [main] testng.configDirectory = /config
[testng] [2024-07-22 02:19:18,000] [main] testng.multiplier = 1.0
[testng] [2024-07-22 02:19:18,000] [main] testng.in-memory = false
[testng] [2024-07-22 02:19:18,000] [main] testng.allow-missing = false
[testng] [2024-07-22 02:19:18,000] [main] user.language = fr
[testng] [2024-07-22 02:19:18,000] [main] user.country = FR
[testng] [2024-07-22 02:19:18,001] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-22 02:19:25,965] [main] ----------------------------------------
[testng] [2024-07-22 02:19:25,965] [main] Total files: 68
[testng] [2024-07-22 02:19:25,965] [main] Scan time: 7.964 s (117 ms/file)
[testng] [2024-07-22 02:19:25,966] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 60 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-22 02:19:53,778] [pool-1-thread-1] Initializing /data/jason/imaris_5_5_demoimages/HeLaCell.ims:
[testng] 02:19:53,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:19:53,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_02-19-53.log]
[testng] 02:19:53,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2099f621 - End of configuration.
[testng] [2024-07-22 02:19:53,831] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0013.ims:
[testng] 02:19:53,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:19:53,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_02-19-53.log]
[testng] 02:19:53,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@711a7333 - End of configuration.
[testng] [2024-07-22 02:19:53,853] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0002.ims:
[testng] 02:19:53,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:19:53,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_02-19-53.log]
[testng] 02:19:53,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773d7a0c - End of configuration.
[testng] [2024-07-22 02:19:53,876] [pool-1-thread-10] Initializing /data/public/davemason/Convallaria_3C_1T_2x2grid_confocal.ims:
[testng] 02:19:53,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:19:53,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_02-19-53.log]
[testng] 02:19:53,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eea10b1 - End of configuration.
[testng] [2024-07-22 02:19:53,932] [pool-1-thread-9] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_IMS3.ims:
[testng] 02:19:53,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:19:53,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_02-19-53.log]
[testng] 02:19:53,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dd9c18 - End of configuration.
[testng] [2024-07-22 02:19:53,977] [pool-1-thread-8] Initializing /data/public/davemason/Convallaria_3C_1T_confocal.ims:
[testng] 02:19:53,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:19:53,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:53,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_02-19-53.log]
[testng] 02:19:53,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b06caf1 - End of configuration.
[testng] [2024-07-22 02:19:54,010] [pool-1-thread-7] Initializing /data/qa-17839/Fusion_2048_2048_50_1_Acquire.ims:
[testng] 02:19:54,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:19:54,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_02-19-54.log]
[testng] 02:19:54,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cdc6c24 - End of configuration.
[testng] [2024-07-22 02:19:54,064] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0014.ims:
[testng] 02:19:54,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:19:54,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_02-19-54.log]
[testng] 02:19:54,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7adb795f - End of configuration.
[testng] [2024-07-22 02:19:54,088] [pool-1-thread-5] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims:
[testng] 02:19:54,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:19:54,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_02-19-54.log]
[testng] 02:19:54,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a9537e - End of configuration.
[testng] [2024-07-22 02:19:54,147] [pool-1-thread-4] Initializing /data/oliver/Stack2_float32Bit.ims:
[testng] 02:19:54,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:19:54,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_02-19-54.log]
[testng] 02:19:54,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b22461c - End of configuration.
[testng] [2024-07-22 02:19:54,192] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0007.ims:
[testng] 02:19:54,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:19:54,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_02-19-54.log]
[testng] 02:19:54,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@444213de - End of configuration.
[testng] [2024-07-22 02:19:54,219] [pool-1-thread-2] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims:
[testng] 02:19:54,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:19:54,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:19:54,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_02-19-54.log]
[testng] 02:19:54,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48179959 - End of configuration.
BUILD SUCCESSFUL
Total time: 2 minutes 18 seconds
Finished: SUCCESS