Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1447075687758037398.sh + '[' cellworx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20181_merge_ci -v /uod/idr/repos/curated/cellworx:/data -v /uod/idr-scratch/merge-ci/curated/cellworx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:56:07,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:56:07,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:56:07,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:56:07,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:56:07,677 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:56:07,677 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:56:07,677 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:56:07,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:56:07,678 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 13:56:07,679 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 13:56:07,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 392 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:56:07,689] [main] java.version = 1.8.0_342 [testng] 13:56:07,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:56:07,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:56:07,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-56-07.log] [testng] 13:56:07,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:56:07,744] [main] testng.directory = /data [testng] [2024-07-22 13:56:07,744] [main] testng.configDirectory = /config [testng] [2024-07-22 13:56:07,760] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:56:07,760] [main] testng.in-memory = false [testng] [2024-07-22 13:56:07,761] [main] testng.allow-missing = false [testng] [2024-07-22 13:56:07,761] [main] user.language = fr [testng] [2024-07-22 13:56:07,761] [main] user.country = FR [testng] [2024-07-22 13:56:07,761] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:57:20,615] [main] ---------------------------------------- [testng] [2024-07-22 13:57:20,615] [main] Total files: 4 [testng] [2024-07-22 13:57:20,615] [main] Scan time: 72.854 s (18213 ms/file) [testng] [2024-07-22 13:57:20,615] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 4 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:57:38,571] [pool-1-thread-1] Initializing /data/pki/SKMEL28_10K_1.HTD: [testng] 13:57:38,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:57:38,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:38,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-57-38.log] [testng] 13:57:38,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@131154b0 - End of configuration. [testng] [2024-07-22 13:57:39,408] [pool-1-thread-4] Initializing /data/hms/184A1-225/184A1-225.HTD: [testng] 13:57:39,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:57:39,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:39,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-57-39.log] [testng] 13:57:39,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c99a31 - End of configuration. [testng] [2024-07-22 13:57:41,744] [pool-1-thread-3] Initializing /data/hms/96-well-sample-dataset/PNL_Representative_Data_Set_96_Well/PNL_Representative_Data_Set_96_Well.HTD: [testng] 13:57:41,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:57:41,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:41,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-57-41.log] [testng] 13:57:41,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e487ea - End of configuration. [testng] [2024-07-22 13:57:42,902] [pool-1-thread-2] Initializing /data/hms/plate1/plate1.HTD: [testng] 13:57:42,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:57:42,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:57:42,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-57-42.log] [testng] 13:57:42,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@429b32ce - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 212, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 33 seconds Finished: SUCCESS