Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8701570582596502113.sh + '[' afi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20226_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 14:14:37,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:14:37,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:14:37,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:14:37,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:14:37,679 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:14:37,680 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:14:37,680 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:14:37,681 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:14:37,681 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 14:14:37,683 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 14:14:37,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 461 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 14:14:37,706] [main] java.version = 1.8.0_342 [testng] 14:14:37,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:14:37,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:37,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_14-14-37.log] [testng] 14:14:37,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 14:14:37,807] [main] testng.directory = /data [testng] [2024-07-22 14:14:37,808] [main] testng.configDirectory = /config [testng] [2024-07-22 14:14:37,827] [main] testng.multiplier = 1.0 [testng] [2024-07-22 14:14:37,827] [main] testng.in-memory = false [testng] [2024-07-22 14:14:37,828] [main] testng.allow-missing = false [testng] [2024-07-22 14:14:37,828] [main] user.language = fr [testng] [2024-07-22 14:14:37,828] [main] user.country = FR [testng] [2024-07-22 14:14:37,828] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 14:14:38,681] [main] ---------------------------------------- [testng] [2024-07-22 14:14:38,681] [main] Total files: 16 [testng] [2024-07-22 14:14:38,681] [main] Scan time: 0.853 s (53 ms/file) [testng] [2024-07-22 14:14:38,682] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 14:14:49,026] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 14:14:49,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:14:49,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_14-14-49.log] [testng] 14:14:49,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ab1e93b - End of configuration. [testng] [2024-07-22 14:14:49,151] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 14:14:49,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:14:49,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_14-14-49.log] [testng] 14:14:49,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4536e45 - End of configuration. [testng] [2024-07-22 14:14:49,358] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 14:14:49,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:14:49,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_14-14-49.log] [testng] 14:14:49,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@106dbca1 - End of configuration. [testng] [2024-07-22 14:14:49,481] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 14:14:49,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:14:49,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_14-14-49.log] [testng] 14:14:49,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2dbf6d - End of configuration. [testng] [2024-07-22 14:14:49,543] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 14:14:49,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:14:49,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_14-14-49.log] [testng] 14:14:49,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bebba56 - End of configuration. [testng] [2024-07-22 14:14:49,623] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 14:14:49,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:14:49,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_14-14-49.log] [testng] 14:14:49,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1260af2a - End of configuration. [testng] [2024-07-22 14:14:49,941] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 14:14:49,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:14:49,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:49,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_14-14-49.log] [testng] 14:14:49,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@724e328b - End of configuration. [testng] [2024-07-22 14:14:50,012] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 14:14:50,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:14:50,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:50,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_14-14-50.log] [testng] 14:14:50,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607caa95 - End of configuration. [testng] [2024-07-22 14:14:50,090] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 14:14:50,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:14:50,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:50,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_14-14-50.log] [testng] 14:14:50,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16e199f3 - End of configuration. [testng] [2024-07-22 14:14:50,214] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 14:14:50,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:14:50,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:50,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_14-14-50.log] [testng] 14:14:50,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55b7c7d - End of configuration. [testng] [2024-07-22 14:14:50,276] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 14:14:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:14:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:50,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_14-14-50.log] [testng] 14:14:50,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@528d6bb3 - End of configuration. [testng] [2024-07-22 14:14:50,353] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 14:14:50,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:14:50,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:14:50,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_14-14-50.log] [testng] 14:14:50,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca0d398 - End of configuration. [testng] [2024-07-22 14:15:44,094] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-07-22 14:15:46,936] [pool-1-thread-3] Initializing /data/samples/5343.afi: [testng] [2024-07-22 14:15:47,236] [pool-1-thread-8] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 59 seconds Finished: SUCCESS