Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins9376114535076796058.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20278_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 14:47:44,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 14:47:44,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 14:47:44,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:47:44,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:47:44,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 14:47:44,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 14:47:44,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 14:47:44,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:47:44,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:47:44,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 14:47:44,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 14:47:44,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 14:47:44,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:47:44,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:47:44,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:47:44,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:47:44,894 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:47:44,894 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:47:44,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:47:44,895 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:47:44,895 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 14:47:44,896 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 14:47:44,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 324 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 14:47:44,908] [main] java.version = 1.8.0_342 [testng] 14:47:44,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:47:44,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:44,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_14-47-44.log] [testng] 14:47:44,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 14:47:44,968] [main] testng.directory = /data [testng] [2024-07-22 14:47:44,968] [main] testng.configDirectory = /config [testng] [2024-07-22 14:47:44,981] [main] testng.multiplier = 1.0 [testng] [2024-07-22 14:47:44,982] [main] testng.in-memory = false [testng] [2024-07-22 14:47:44,982] [main] testng.allow-missing = false [testng] [2024-07-22 14:47:44,982] [main] user.language = fr [testng] [2024-07-22 14:47:44,982] [main] user.country = FR [testng] [2024-07-22 14:47:44,982] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 14:47:45,516] [main] ---------------------------------------- [testng] [2024-07-22 14:47:45,516] [main] Total files: 18 [testng] [2024-07-22 14:47:45,516] [main] Scan time: 0.534 s (29 ms/file) [testng] [2024-07-22 14:47:45,516] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 14:47:47,158] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 14:47:47,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:47:47,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_14-47-47.log] [testng] 14:47:47,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a3a2ac8 - End of configuration. [testng] [2024-07-22 14:47:47,194] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 14:47:47,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:47:47,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_14-47-47.log] [testng] 14:47:47,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268ca8b0 - End of configuration. [testng] [2024-07-22 14:47:47,224] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 14:47:47,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:47:47,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_14-47-47.log] [testng] 14:47:47,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2751bf6 - End of configuration. [testng] [2024-07-22 14:47:47,253] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 14:47:47,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:47:47,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_14-47-47.log] [testng] 14:47:47,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba84ba - End of configuration. [testng] [2024-07-22 14:47:47,279] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 14:47:47,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:47:47,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_14-47-47.log] [testng] 14:47:47,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21aa6f1a - End of configuration. [testng] [2024-07-22 14:47:47,290] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 14:47:47,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:47:47,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_14-47-47.log] [testng] 14:47:47,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447c5cf9 - End of configuration. [testng] [2024-07-22 14:47:47,316] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] 14:47:47,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:47:47,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_14-47-47.log] [testng] 14:47:47,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d0e1bf8 - End of configuration. [testng] [2024-07-22 14:47:47,331] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd: [testng] 14:47:47,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:47:47,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_14-47-47.log] [testng] 14:47:47,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75fa4eac - End of configuration. [testng] [2024-07-22 14:47:47,362] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] 14:47:47,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:47:47,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_14-47-47.log] [testng] 14:47:47,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b15cd2c - End of configuration. [testng] [2024-07-22 14:47:47,534] [pool-1-thread-4] Initializing /data/misc/smilie.psd: [testng] 14:47:47,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:47:47,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_14-47-47.log] [testng] 14:47:47,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3e468b - End of configuration. [testng] [2024-07-22 14:47:47,566] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 14:47:47,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:47:47,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_14-47-47.log] [testng] 14:47:47,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ea449 - End of configuration. [testng] [2024-07-22 14:47:47,674] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] 14:47:47,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:47:47,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:47:47,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_14-47-47.log] [testng] 14:47:47,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16161854 - End of configuration. [testng] [2024-07-22 14:47:50,482] [pool-1-thread-5] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-07-22 14:47:50,854] [pool-1-thread-9] Initializing /data/ascb/423.psd: [testng] [2024-07-22 14:47:50,943] [pool-1-thread-4] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-07-22 14:47:51,709] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-07-22 14:47:51,719] [pool-1-thread-7] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-07-22 14:47:51,783] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS