Started by upstream project "BIOFORMATS-test-repo" build number 129
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins10099333503525241516.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20288_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 14:50:46,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 14:50:46,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 14:50:46,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 14:50:46,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 14:50:46,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 14:50:46,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 14:50:46,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 14:50:46,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 14:50:46,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 14:50:46,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 14:50:46,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 14:50:46,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 14:50:46,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 14:50:46,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 14:50:46,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 14:50:46,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 14:50:46,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 14:50:46,979 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 14:50:46,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 14:50:46,980 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 14:50:46,980 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 14:50:46,981 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 14:50:46,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 317 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-22 14:50:46,993] [main] java.version = 1.8.0_342
   [testng] 14:50:46,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 14:50:46,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:50:47,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_14-50-47.log]
   [testng] 14:50:47,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-07-22 14:50:47,060] [main] testng.directory = /data
   [testng] [2024-07-22 14:50:47,060] [main] testng.configDirectory = /config
   [testng] [2024-07-22 14:50:47,075] [main] testng.multiplier = 1.0
   [testng] [2024-07-22 14:50:47,076] [main] testng.in-memory = false
   [testng] [2024-07-22 14:50:47,076] [main] testng.allow-missing = false
   [testng] [2024-07-22 14:50:47,076] [main] user.language = fr
   [testng] [2024-07-22 14:50:47,076] [main] user.country = FR
   [testng] [2024-07-22 14:50:47,076] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-07-22 14:51:00,497] [main] ----------------------------------------
   [testng] [2024-07-22 14:51:00,498] [main] Total files: 944
   [testng] [2024-07-22 14:51:00,498] [main] Scan time: 13.421 s (14 ms/file)
   [testng] [2024-07-22 14:51:00,498] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-22 14:51:30,555] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 14:51:30,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 14:51:30,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_14-51-30.log]
   [testng] 14:51:30,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9068431 - End of configuration.
   [testng] [2024-07-22 14:51:30,608] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 14:51:30,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 14:51:30,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_14-51-30.log]
   [testng] 14:51:30,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f29009 - End of configuration.
   [testng] [2024-07-22 14:51:30,641] [pool-1-thread-11] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 14:51:30,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 14:51:30,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_14-51-30.log]
   [testng] 14:51:30,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a68ed3 - End of configuration.
   [testng] [2024-07-22 14:51:30,663] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 14:51:30,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 14:51:30,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_14-51-30.log]
   [testng] 14:51:30,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4057dafa - End of configuration.
   [testng] [2024-07-22 14:51:30,713] [pool-1-thread-9] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 14:51:30,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 14:51:30,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_14-51-30.log]
   [testng] 14:51:30,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64930170 - End of configuration.
   [testng] [2024-07-22 14:51:30,751] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 14:51:30,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 14:51:30,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_14-51-30.log]
   [testng] 14:51:30,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45265a08 - End of configuration.
   [testng] [2024-07-22 14:51:30,790] [pool-1-thread-7] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 14:51:30,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 14:51:30,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_14-51-30.log]
   [testng] 14:51:30,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f0d5ba - End of configuration.
   [testng] [2024-07-22 14:51:30,821] [pool-1-thread-6] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 14:51:30,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 14:51:30,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_14-51-30.log]
   [testng] 14:51:30,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33815518 - End of configuration.
   [testng] [2024-07-22 14:51:30,864] [pool-1-thread-5] Initializing /data/brian/Series002_z01.tif: 
   [testng] 14:51:30,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 14:51:30,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_14-51-30.log]
   [testng] 14:51:30,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7157f89f - End of configuration.
   [testng] [2024-07-22 14:51:30,897] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 14:51:30,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 14:51:30,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_14-51-30.log]
   [testng] 14:51:30,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e7f93c - End of configuration.
   [testng] [2024-07-22 14:51:30,926] [pool-1-thread-3] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 14:51:30,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 14:51:30,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_14-51-30.log]
   [testng] 14:51:30,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62af8dcb - End of configuration.
   [testng] [2024-07-22 14:51:30,962] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 14:51:30,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 14:51:30,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 14:51:30,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_14-51-30.log]
   [testng] 14:51:30,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483f1dc8 - End of configuration.
   [testng] [2024-07-22 14:51:32,869] [pool-1-thread-11] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] [2024-07-22 14:51:32,905] [pool-1-thread-4] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] [2024-07-22 14:51:37,829] [pool-1-thread-12] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 10 minutes 16 seconds
Finished: SUCCESS