Started by upstream project "BIOFORMATS-test-repo" build number 129
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6341927931311011092.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20300_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 15:00:11,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:00:11,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 15:00:11,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:00:11,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:00:11,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:00:11,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:00:11,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:00:11,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:00:11,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:00:11,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:00:11,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:00:11,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:00:12,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:00:12,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:00:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:00:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:00:12,221 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:00:12,221 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:00:12,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:00:12,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:00:12,222 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 15:00:12,223 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 15:00:12,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-22 15:00:12,233] [main] java.version = 1.8.0_342
[testng] 15:00:12,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:00:12,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:12,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_15-00-12.log]
[testng] 15:00:12,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-22 15:00:12,285] [main] testng.directory = /data
[testng] [2024-07-22 15:00:12,285] [main] testng.configDirectory = /config
[testng] [2024-07-22 15:00:12,297] [main] testng.multiplier = 1.0
[testng] [2024-07-22 15:00:12,297] [main] testng.in-memory = false
[testng] [2024-07-22 15:00:12,297] [main] testng.allow-missing = false
[testng] [2024-07-22 15:00:12,297] [main] user.language = fr
[testng] [2024-07-22 15:00:12,297] [main] user.country = FR
[testng] [2024-07-22 15:00:12,298] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-22 15:00:13,346] [main] ----------------------------------------
[testng] [2024-07-22 15:00:13,346] [main] Total files: 17
[testng] [2024-07-22 15:00:13,346] [main] Scan time: 1.048 s (61 ms/file)
[testng] [2024-07-22 15:00:13,346] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-22 15:00:14,387] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 15:00:14,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:00:14,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_15-00-14.log]
[testng] 15:00:14,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78788373 - End of configuration.
[testng] [2024-07-22 15:00:14,414] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 15:00:14,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 15:00:14,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_15-00-14.log]
[testng] 15:00:14,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e0da4c - End of configuration.
[testng] [2024-07-22 15:00:14,427] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 15:00:14,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 15:00:14,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_15-00-14.log]
[testng] 15:00:14,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c63dc60 - End of configuration.
[testng] [2024-07-22 15:00:14,441] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 15:00:14,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 15:00:14,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_15-00-14.log]
[testng] 15:00:14,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df774a4 - End of configuration.
[testng] [2024-07-22 15:00:14,452] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 15:00:14,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 15:00:14,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_15-00-14.log]
[testng] 15:00:14,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207e28b3 - End of configuration.
[testng] [2024-07-22 15:00:14,485] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 15:00:14,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 15:00:14,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_15-00-14.log]
[testng] 15:00:14,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37e75942 - End of configuration.
[testng] [2024-07-22 15:00:14,496] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 15:00:14,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 15:00:14,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_15-00-14.log]
[testng] 15:00:14,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7b582 - End of configuration.
[testng] [2024-07-22 15:00:14,506] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 15:00:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 15:00:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_15-00-14.log]
[testng] 15:00:14,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a603d2f - End of configuration.
[testng] [2024-07-22 15:00:14,519] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 15:00:14,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 15:00:14,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_15-00-14.log]
[testng] 15:00:14,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a2c15d1 - End of configuration.
[testng] [2024-07-22 15:00:14,534] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 15:00:14,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 15:00:14,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_15-00-14.log]
[testng] 15:00:14,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21fbe266 - End of configuration.
[testng] [2024-07-22 15:00:14,552] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 15:00:14,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 15:00:14,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_15-00-14.log]
[testng] 15:00:14,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd4ac2 - End of configuration.
[testng] [2024-07-22 15:00:14,565] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 15:00:14,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 15:00:14,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:00:14,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_15-00-14.log]
[testng] 15:00:14,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@691e2ade - End of configuration.
[testng] [2024-07-22 15:00:16,217] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] [2024-07-22 15:00:16,236] [pool-1-thread-8] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] [2024-07-22 15:00:16,255] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] [2024-07-22 15:00:16,298] [pool-1-thread-4] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-07-22 15:00:16,319] [pool-1-thread-2] Initializing /data/samples/16bit 320x256x1.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS