Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6856441761136711878.sh + '[' pict = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20360_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:21:41,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:21:41,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:21:41,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:21:41,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:21:41,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:21:41,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:21:41,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:21:41,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:21:41,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:21:41,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:21:41,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:21:41,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:21:41,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:21:41,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:21:41,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:21:41,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:21:41,328 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:21:41,328 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:21:41,328 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:21:41,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:21:41,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:21:41,330 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:21:41,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:21:41,339] [main] java.version = 11.0.16 [testng] 11:21:41,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:21:41,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:41,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-21-41.log] [testng] 11:21:41,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:21:41,394] [main] testng.directory = /data [testng] [2024-07-23 11:21:41,395] [main] testng.configDirectory = /config [testng] [2024-07-23 11:21:41,407] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:21:41,408] [main] testng.in-memory = false [testng] [2024-07-23 11:21:41,408] [main] testng.allow-missing = false [testng] [2024-07-23 11:21:41,408] [main] user.language = en [testng] [2024-07-23 11:21:41,408] [main] user.country = ${user.country} [testng] [2024-07-23 11:21:41,408] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:21:41,877] [main] ---------------------------------------- [testng] [2024-07-23 11:21:41,877] [main] Total files: 25 [testng] [2024-07-23 11:21:41,877] [main] Scan time: 0.468 s (18 ms/file) [testng] [2024-07-23 11:21:41,877] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:21:43,698] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 11:21:43,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:21:43,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-21-43.log] [testng] 11:21:43,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b2e797 - End of configuration. [testng] [2024-07-23 11:21:43,740] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 11:21:43,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:21:43,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-21-43.log] [testng] 11:21:43,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ea79b7a - End of configuration. [testng] [2024-07-23 11:21:43,755] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] 11:21:43,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:21:43,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-21-43.log] [testng] 11:21:43,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a3f62a - End of configuration. [testng] [2024-07-23 11:21:43,768] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 11:21:43,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:21:43,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-21-43.log] [testng] 11:21:43,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bc76149 - End of configuration. [testng] [2024-07-23 11:21:43,794] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 11:21:43,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:21:43,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-21-43.log] [testng] 11:21:43,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428db45 - End of configuration. [testng] [2024-07-23 11:21:43,969] [pool-1-thread-8] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 11:21:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:21:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-21-43.log] [testng] 11:21:43,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48d85d55 - End of configuration. [testng] [2024-07-23 11:21:43,985] [pool-1-thread-7] Initializing /data/brian/images/WHT.PCT: [testng] 11:21:43,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:21:43,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:43,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-21-43.log] [testng] 11:21:43,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27983a5d - End of configuration. [testng] [2024-07-23 11:21:44,010] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] 11:21:44,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:21:44,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:44,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-21-44.log] [testng] 11:21:44,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43190b0 - End of configuration. [testng] [2024-07-23 11:21:44,028] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] 11:21:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:21:44,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:44,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-21-44.log] [testng] 11:21:44,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a318279 - End of configuration. [testng] [2024-07-23 11:21:44,048] [pool-1-thread-4] Initializing /data/jqd/mireSixteen.pict: [testng] 11:21:44,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:21:44,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:44,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-21-44.log] [testng] 11:21:44,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a305db - End of configuration. [testng] [2024-07-23 11:21:44,060] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 11:21:44,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:21:44,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:44,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-21-44.log] [testng] 11:21:44,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4128c441 - End of configuration. [testng] [2024-07-23 11:21:44,084] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] 11:21:44,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:21:44,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:21:44,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-21-44.log] [testng] 11:21:44,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41caba73 - End of configuration. [testng] [2024-07-23 11:21:46,355] [pool-1-thread-8] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-07-23 11:21:46,368] [pool-1-thread-12] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-23 11:21:46,393] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] [2024-07-23 11:21:46,427] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-07-23 11:21:46,472] [pool-1-thread-2] Initializing /data/misc/planet.pict: [testng] [2024-07-23 11:21:46,507] [pool-1-thread-10] Initializing /data/jqd/32bit.pict: [testng] [2024-07-23 11:21:46,532] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-07-23 11:21:46,546] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] [2024-07-23 11:21:46,557] [pool-1-thread-1] Initializing /data/brian/images/RED.PCT: [testng] [2024-07-23 11:21:46,578] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-07-23 11:21:47,270] [pool-1-thread-3] Initializing /data/misc/planet2.pict: [testng] [2024-07-23 11:21:47,313] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-07-23 11:21:47,340] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS