Started by upstream project "BIOFORMATS-test-repo" build number 130
originally caused by:
Started by upstream project "Trigger" build number 147
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12405127396081553879.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20404_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 11:53:51,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:53:51,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 11:53:51,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:53:51,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:53:51,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:53:51,173 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:53:51,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:53:51,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:53:51,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:53:51,174 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:53:51,174 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:53:51,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:53:51,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:53:51,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:53:51,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:53:51,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:53:51,388 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:53:51,388 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:53:51,388 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:53:51,389 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:53:51,389 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 11:53:51,390 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 11:53:51,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-23 11:53:51,400] [main] java.version = 11.0.16
[testng] 11:53:51,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:53:51,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:51,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-53-51.log]
[testng] 11:53:51,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-07-23 11:53:51,453] [main] testng.directory = /data
[testng] [2024-07-23 11:53:51,453] [main] testng.configDirectory = /config
[testng] [2024-07-23 11:53:51,464] [main] testng.multiplier = 1.0
[testng] [2024-07-23 11:53:51,465] [main] testng.in-memory = false
[testng] [2024-07-23 11:53:51,465] [main] testng.allow-missing = false
[testng] [2024-07-23 11:53:51,465] [main] user.language = en
[testng] [2024-07-23 11:53:51,465] [main] user.country = ${user.country}
[testng] [2024-07-23 11:53:51,465] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-23 11:53:51,845] [main] ----------------------------------------
[testng] [2024-07-23 11:53:51,845] [main] Total files: 19
[testng] [2024-07-23 11:53:51,846] [main] Scan time: 0.379 s (19 ms/file)
[testng] [2024-07-23 11:53:51,846] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-23 11:53:53,160] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 11:53:53,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:53:53,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-53-53.log]
[testng] 11:53:53,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b93f071 - End of configuration.
[testng] [2024-07-23 11:53:53,199] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 11:53:53,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:53:53,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-53-53.log]
[testng] 11:53:53,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25329239 - End of configuration.
[testng] [2024-07-23 11:53:53,279] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] 11:53:53,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:53:53,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-53-53.log]
[testng] 11:53:53,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eee1572 - End of configuration.
[testng] [2024-07-23 11:53:53,308] [pool-1-thread-10] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 11:53:53,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:53:53,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-53-53.log]
[testng] 11:53:53,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53afc15b - End of configuration.
[testng] [2024-07-23 11:53:53,328] [pool-1-thread-9] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 11:53:53,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:53:53,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-53-53.log]
[testng] 11:53:53,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration.
[testng] [2024-07-23 11:53:53,350] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 11:53:53,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:53:53,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-53-53.log]
[testng] 11:53:53,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b8bca5c - End of configuration.
[testng] [2024-07-23 11:53:53,423] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 11:53:53,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:53:53,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-53-53.log]
[testng] 11:53:53,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c07dd9 - End of configuration.
[testng] [2024-07-23 11:53:53,451] [pool-1-thread-6] Initializing /data/samples/800R PICT0010.MRW:
[testng] 11:53:53,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:53:53,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-53-53.log]
[testng] 11:53:53,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3024f2d7 - End of configuration.
[testng] [2024-07-23 11:53:53,491] [pool-1-thread-5] Initializing /data/samples/400R PICT0003.MRW:
[testng] 11:53:53,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:53:53,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-53-53.log]
[testng] 11:53:53,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fbf597 - End of configuration.
[testng] [2024-07-23 11:53:53,523] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 11:53:53,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:53:53,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-53-53.log]
[testng] 11:53:53,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c301d30 - End of configuration.
[testng] [2024-07-23 11:53:53,547] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW:
[testng] 11:53:53,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:53:53,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-53-53.log]
[testng] 11:53:53,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42852aca - End of configuration.
[testng] [2024-07-23 11:53:53,575] [pool-1-thread-2] Initializing /data/samples/200R PICT0002.MRW:
[testng] 11:53:53,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:53:53,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:53:53,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-53-53.log]
[testng] 11:53:53,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5144c452 - End of configuration.
[testng] [2024-07-23 11:54:00,653] [pool-1-thread-1] Initializing /data/samples/3200R PICT0006.MRW:
[testng] [2024-07-23 11:54:00,668] [pool-1-thread-8] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2024-07-23 11:54:00,685] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-07-23 11:54:00,761] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-07-23 11:54:00,773] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-07-23 11:54:00,788] [pool-1-thread-2] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-07-23 11:54:00,806] [pool-1-thread-3] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 18 seconds
Finished: SUCCESS