Started by upstream project "BIOFORMATS-test-repo" build number 132
originally caused by:
Started by upstream project "Trigger" build number 152
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6431604428618683809.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20652_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 10:58:56,886 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 10:58:56,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 10:58:56,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:58:56,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 10:58:56,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 10:58:56,889 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 10:58:56,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 10:58:56,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:58:56,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 10:58:56,891 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 10:58:56,891 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 10:58:56,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 10:58:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 10:58:57,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 10:58:57,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 10:58:57,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 10:58:57,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 10:58:57,151 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 10:58:57,151 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 10:58:57,151 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 10:58:57,151 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 10:58:57,152 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 10:58:57,152 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 262 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-25 10:58:57,162] [main] java.version = 21
[testng] 10:58:57,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 10:58:57,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:57,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_10-58-57.log]
[testng] 10:58:57,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-25 10:58:57,228] [main] testng.directory = /data
[testng] [2024-07-25 10:58:57,228] [main] testng.configDirectory = /config
[testng] [2024-07-25 10:58:57,245] [main] testng.multiplier = 1.0
[testng] [2024-07-25 10:58:57,246] [main] testng.in-memory = false
[testng] [2024-07-25 10:58:57,246] [main] testng.allow-missing = false
[testng] [2024-07-25 10:58:57,246] [main] user.language = en
[testng] [2024-07-25 10:58:57,246] [main] user.country = ${user.country}
[testng] [2024-07-25 10:58:57,246] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-25 10:58:57,722] [main] ----------------------------------------
[testng] [2024-07-25 10:58:57,722] [main] Total files: 21
[testng] [2024-07-25 10:58:57,722] [main] Scan time: 0.475 s (22 ms/file)
[testng] [2024-07-25 10:58:57,723] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-25 10:58:58,909] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim:
[testng] 10:58:58,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 10:58:58,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:58,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_10-58-58.log]
[testng] 10:58:58,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7e2af5 - End of configuration.
[testng] [2024-07-25 10:58:58,941] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim:
[testng] 10:58:58,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 10:58:58,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:58,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-25_10-58-58.log]
[testng] 10:58:58,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f805497 - End of configuration.
[testng] [2024-07-25 10:58:58,959] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim:
[testng] 10:58:58,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 10:58:58,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:58,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_10-58-58.log]
[testng] 10:58:58,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19e81d7c - End of configuration.
[testng] [2024-07-25 10:58:58,985] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim:
[testng] 10:58:58,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 10:58:58,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:58,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_10-58-58.log]
[testng] 10:58:58,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@272ac519 - End of configuration.
[testng] [2024-07-25 10:58:59,007] [pool-1-thread-9] Initializing /data/venu/Kontrolle0017.lim:
[testng] 10:58:59,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 10:58:59,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_10-58-59.log]
[testng] 10:58:59,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a032986 - End of configuration.
[testng] [2024-07-25 10:58:59,027] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim:
[testng] 10:58:59,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 10:58:59,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_10-58-59.log]
[testng] 10:58:59,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408b8b94 - End of configuration.
[testng] [2024-07-25 10:58:59,052] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim:
[testng] 10:58:59,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 10:58:59,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_10-58-59.log]
[testng] 10:58:59,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42db60c3 - End of configuration.
[testng] [2024-07-25 10:58:59,071] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim:
[testng] 10:58:59,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 10:58:59,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_10-58-59.log]
[testng] 10:58:59,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3639cf74 - End of configuration.
[testng] [2024-07-25 10:58:59,099] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim:
[testng] 10:58:59,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 10:58:59,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_10-58-59.log]
[testng] 10:58:59,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@210e617c - End of configuration.
[testng] [2024-07-25 10:58:59,116] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim:
[testng] 10:58:59,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 10:58:59,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_10-58-59.log]
[testng] 10:58:59,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a85e9c6 - End of configuration.
[testng] [2024-07-25 10:58:59,137] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim:
[testng] 10:58:59,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 10:58:59,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_10-58-59.log]
[testng] 10:58:59,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa7e76f - End of configuration.
[testng] [2024-07-25 10:58:59,150] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim:
[testng] 10:58:59,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 10:58:59,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 10:58:59,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_10-58-59.log]
[testng] 10:58:59,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration.
[testng] [2024-07-25 10:59:01,940] [pool-1-thread-12] Initializing /data/venu/Kontrolle0004.lim:
[testng] [2024-07-25 10:59:01,955] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-07-25 10:59:01,967] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-07-25 10:59:01,979] [pool-1-thread-10] Initializing /data/venu/Kontrolle0002.lim:
[testng] [2024-07-25 10:59:01,994] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim:
[testng] [2024-07-25 10:59:02,016] [pool-1-thread-3] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-07-25 10:59:02,031] [pool-1-thread-4] Initializing /data/venu/Kontrolle0012.lim:
[testng] [2024-07-25 10:59:02,045] [pool-1-thread-2] Initializing /data/venu/Kontrolle0009.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS