Started by upstream project "BIOFORMATS-test-repo" build number 132
originally caused by:
Started by upstream project "Trigger" build number 152
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15441040246962800092.sh
+ '[' canon = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20681_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 11:06:49,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 11:06:49,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 11:06:49,642 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:06:49,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:06:49,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:06:49,644 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:06:49,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:06:49,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:06:49,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:06:49,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:06:49,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:06:49,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:06:49,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:06:49,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:06:49,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:06:49,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:06:49,842 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:06:49,842 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:06:49,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:06:49,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:06:49,843 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 11:06:49,843 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 11:06:49,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-25 11:06:49,852] [main] java.version = 21
[testng] 11:06:49,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:06:49,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:49,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_11-06-49.log]
[testng] 11:06:49,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-25 11:06:49,902] [main] testng.directory = /data
[testng] [2024-07-25 11:06:49,902] [main] testng.configDirectory = /config
[testng] [2024-07-25 11:06:49,911] [main] testng.multiplier = 1.0
[testng] [2024-07-25 11:06:49,912] [main] testng.in-memory = false
[testng] [2024-07-25 11:06:49,912] [main] testng.allow-missing = false
[testng] [2024-07-25 11:06:49,912] [main] user.language = en
[testng] [2024-07-25 11:06:49,912] [main] user.country = ${user.country}
[testng] [2024-07-25 11:06:49,912] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-25 11:06:51,475] [main] ----------------------------------------
[testng] [2024-07-25 11:06:51,476] [main] Total files: 13
[testng] [2024-07-25 11:06:51,476] [main] Scan time: 1.563 s (120 ms/file)
[testng] [2024-07-25 11:06:51,476] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-25 11:06:54,825] [pool-1-thread-1] Initializing /data/pete/DNG-CR2.CR2:
[testng] 11:06:54,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:06:54,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:54,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_11-06-54.log]
[testng] 11:06:54,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5255ea68 - End of configuration.
[testng] [2024-07-25 11:06:54,878] [pool-1-thread-12] Initializing /data/cls/_N5Y0001.CR2:
[testng] 11:06:54,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:06:54,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:54,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-25_11-06-54.log]
[testng] 11:06:54,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@822e875 - End of configuration.
[testng] [2024-07-25 11:06:54,940] [pool-1-thread-11] Initializing /data/pete/DNG-CRW.CRW:
[testng] 11:06:54,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:06:54,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:54,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_11-06-54.log]
[testng] 11:06:54,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e36b18 - End of configuration.
[testng] [2024-07-25 11:06:54,994] [pool-1-thread-10] Initializing /data/pete/Raw-THM.THM:
[testng] 11:06:54,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:06:54,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:54,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_11-06-54.log]
[testng] 11:06:54,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d9c50fe - End of configuration.
[testng] [2024-07-25 11:06:55,376] [pool-1-thread-9] Initializing /data/pete/Raw-CR2.CR2:
[testng] 11:06:55,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:06:55,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:55,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_11-06-55.log]
[testng] 11:06:55,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3548e7a0 - End of configuration.
[testng] [2024-07-25 11:06:55,697] [pool-1-thread-8] Initializing /data/pete/Learning to Fly.JPG:
[testng] 11:06:55,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:06:55,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:55,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_11-06-55.log]
[testng] 11:06:55,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fe94f - End of configuration.
[testng] [2024-07-25 11:06:55,979] [pool-1-thread-7] Initializing /data/pete/DNG-JPG.JPG:
[testng] 11:06:55,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:06:55,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:55,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_11-06-55.log]
[testng] 11:06:55,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ad6f31 - End of configuration.
[testng] [2024-07-25 11:06:56,066] [pool-1-thread-6] Initializing /data/pete/DNG-THM.THM:
[testng] 11:06:56,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:06:56,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:56,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_11-06-56.log]
[testng] 11:06:56,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47da6e88 - End of configuration.
[testng] [2024-07-25 11:06:56,108] [pool-1-thread-5] Initializing /data/pete/Raw-JPG.JPG:
[testng] 11:06:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:06:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:56,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_11-06-56.log]
[testng] 11:06:56,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d0199d - End of configuration.
[testng] [2024-07-25 11:06:56,655] [pool-1-thread-4] Initializing /data/pete/Raw-CRW.CRW:
[testng] 11:06:56,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:06:56,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:56,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_11-06-56.log]
[testng] 11:06:56,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@439ac465 - End of configuration.
[testng] [2024-07-25 11:06:57,066] [pool-1-thread-3] Initializing /data/pete/DNG-WAV.WAV:
[testng] 11:06:57,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:06:57,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:57,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_11-06-57.log]
[testng] 11:06:57,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217aa209 - End of configuration.
[testng] [2024-07-25 11:06:57,104] [pool-1-thread-2] Initializing /data/kinor/2013_03_08_0808.CR2:
[testng] 11:06:57,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:06:57,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:06:57,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_11-06-57.log]
[testng] 11:06:57,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f312b63 - End of configuration.
[testng] [2024-07-25 11:07:00,661] [pool-1-thread-12] Initializing /data/pete/Raw-WAV.WAV:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS