Started by upstream project "BIOFORMATS-test-repo" build number 132
originally caused by:
Started by upstream project "Trigger" build number 152
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5196110747908215842.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20792_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 12:17:37,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 12:17:37,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 12:17:37,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:17:37,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:17:37,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 12:17:37,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 12:17:37,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 12:17:37,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:17:37,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:17:37,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 12:17:37,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 12:17:37,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 12:17:37,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 12:17:37,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 12:17:37,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 12:17:37,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 12:17:37,753 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 12:17:37,753 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 12:17:37,753 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 12:17:37,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 12:17:37,754 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 12:17:37,754 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 12:17:37,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-25 12:17:37,765] [main] java.version = 21
[testng] 12:17:37,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 12:17:37,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:37,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_12-17-37.log]
[testng] 12:17:37,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-07-25 12:17:37,818] [main] testng.directory = /data
[testng] [2024-07-25 12:17:37,818] [main] testng.configDirectory = /config
[testng] [2024-07-25 12:17:37,827] [main] testng.multiplier = 1.0
[testng] [2024-07-25 12:17:37,828] [main] testng.in-memory = false
[testng] [2024-07-25 12:17:37,828] [main] testng.allow-missing = false
[testng] [2024-07-25 12:17:37,828] [main] user.language = en
[testng] [2024-07-25 12:17:37,828] [main] user.country = ${user.country}
[testng] [2024-07-25 12:17:37,828] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-07-25 12:17:38,730] [main] ----------------------------------------
[testng] [2024-07-25 12:17:38,730] [main] Total files: 17
[testng] [2024-07-25 12:17:38,730] [main] Scan time: 0.901 s (53 ms/file)
[testng] [2024-07-25 12:17:38,730] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-25 12:17:39,678] [pool-1-thread-1] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] 12:17:39,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 12:17:39,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_12-17-39.log]
[testng] 12:17:39,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ee0843 - End of configuration.
[testng] [2024-07-25 12:17:39,713] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 12:17:39,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 12:17:39,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-25_12-17-39.log]
[testng] 12:17:39,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62449036 - End of configuration.
[testng] [2024-07-25 12:17:39,726] [pool-1-thread-11] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 12:17:39,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 12:17:39,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_12-17-39.log]
[testng] 12:17:39,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249dcb20 - End of configuration.
[testng] [2024-07-25 12:17:39,747] [pool-1-thread-10] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 12:17:39,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 12:17:39,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_12-17-39.log]
[testng] 12:17:39,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ee589 - End of configuration.
[testng] [2024-07-25 12:17:39,768] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 12:17:39,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 12:17:39,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_12-17-39.log]
[testng] 12:17:39,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306304b9 - End of configuration.
[testng] [2024-07-25 12:17:39,788] [pool-1-thread-8] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 12:17:39,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 12:17:39,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_12-17-39.log]
[testng] 12:17:39,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6dbbd7 - End of configuration.
[testng] [2024-07-25 12:17:39,803] [pool-1-thread-7] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] 12:17:39,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 12:17:39,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_12-17-39.log]
[testng] 12:17:39,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eec7a4b - End of configuration.
[testng] [2024-07-25 12:17:39,852] [pool-1-thread-6] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 12:17:39,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 12:17:39,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_12-17-39.log]
[testng] 12:17:39,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0c5afb - End of configuration.
[testng] [2024-07-25 12:17:39,871] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] 12:17:39,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 12:17:39,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_12-17-39.log]
[testng] 12:17:39,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2147e37e - End of configuration.
[testng] [2024-07-25 12:17:39,899] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng] 12:17:39,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 12:17:39,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_12-17-39.log]
[testng] 12:17:39,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d39b66d - End of configuration.
[testng] [2024-07-25 12:17:39,917] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 12:17:39,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 12:17:39,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_12-17-39.log]
[testng] 12:17:39,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ce9a97 - End of configuration.
[testng] [2024-07-25 12:17:39,931] [pool-1-thread-2] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] 12:17:39,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 12:17:39,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:17:39,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_12-17-39.log]
[testng] 12:17:39,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516639ac - End of configuration.
[testng] [2024-07-25 12:17:41,640] [pool-1-thread-12] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-07-25 12:17:41,655] [pool-1-thread-7] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] [2024-07-25 12:17:41,665] [pool-1-thread-1] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] [2024-07-25 12:17:41,675] [pool-1-thread-5] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] [2024-07-25 12:17:41,693] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 seconds
Finished: SUCCESS