Started by upstream project "BIOFORMATS-test-repo" build number 133
originally caused by:
Started by upstream project "Trigger" build number 153
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins136987431031432059.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_20873_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:48:10,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:48:10,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 01:48:10,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:48:10,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:48:10,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:48:10,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:48:10,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:48:10,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:48:10,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:48:10,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:48:10,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:48:10,072 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:48:10,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:48:10,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:48:10,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:48:10,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:48:10,351 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:48:10,351 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:48:10,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:48:10,352 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:48:10,352 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 01:48:10,353 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 01:48:10,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-07-26 01:48:10,363] [main] java.version = 1.8.0_342
[testng] 01:48:10,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:48:10,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:10,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_01-48-10.log]
[testng] 01:48:10,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-07-26 01:48:10,424] [main] testng.directory = /data
[testng] [2024-07-26 01:48:10,424] [main] testng.configDirectory = /config
[testng] [2024-07-26 01:48:10,441] [main] testng.multiplier = 1.0
[testng] [2024-07-26 01:48:10,442] [main] testng.in-memory = false
[testng] [2024-07-26 01:48:10,442] [main] testng.allow-missing = false
[testng] [2024-07-26 01:48:10,442] [main] user.language = en
[testng] [2024-07-26 01:48:10,442] [main] user.country = ${user.country}
[testng] [2024-07-26 01:48:10,442] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-07-26 01:48:10,933] [main] ----------------------------------------
[testng] [2024-07-26 01:48:10,933] [main] Total files: 15
[testng] [2024-07-26 01:48:10,934] [main] Scan time: 0.49 s (32 ms/file)
[testng] [2024-07-26 01:48:10,934] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-07-26 01:48:18,423] [pool-1-thread-1] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 01:48:18,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:48:18,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:18,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_01-48-18.log]
[testng] 01:48:18,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@634177cb - End of configuration.
[testng] [2024-07-26 01:48:19,337] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc:
[testng] 01:48:19,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:48:19,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:19,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_01-48-19.log]
[testng] 01:48:19,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@416adb0b - End of configuration.
[testng] [2024-07-26 01:48:19,351] [pool-1-thread-11] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc:
[testng] 01:48:19,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:48:19,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:19,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_01-48-19.log]
[testng] 01:48:19,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df245e7 - End of configuration.
[testng] [2024-07-26 01:48:22,350] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 01:48:22,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:48:22,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_01-48-22.log]
[testng] 01:48:22,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d79beae - End of configuration.
[testng] [2024-07-26 01:48:22,437] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc:
[testng] 01:48:22,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:48:22,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_01-48-22.log]
[testng] 01:48:22,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3f22a2 - End of configuration.
[testng] [2024-07-26 01:48:22,460] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 01:48:22,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:48:22,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_01-48-22.log]
[testng] 01:48:22,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c8ac15 - End of configuration.
[testng] [2024-07-26 01:48:22,495] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 01:48:22,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:48:22,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_01-48-22.log]
[testng] 01:48:22,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d9e1e81 - End of configuration.
[testng] [2024-07-26 01:48:22,510] [pool-1-thread-6] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 01:48:22,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:48:22,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_01-48-22.log]
[testng] 01:48:22,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11226c84 - End of configuration.
[testng] [2024-07-26 01:48:22,633] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 01:48:22,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:48:22,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_01-48-22.log]
[testng] 01:48:22,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e18b74 - End of configuration.
[testng] [2024-07-26 01:48:22,647] [pool-1-thread-4] Initializing /data/daren/test_32bit_float.mnc:
[testng] 01:48:22,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:48:22,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_01-48-22.log]
[testng] 01:48:22,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f97b1f0 - End of configuration.
[testng] [2024-07-26 01:48:22,944] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc:
[testng] 01:48:22,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:48:22,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_01-48-22.log]
[testng] 01:48:22,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c23a322 - End of configuration.
[testng] [2024-07-26 01:48:22,957] [pool-1-thread-2] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc:
[testng] 01:48:22,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:48:22,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:22,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_01-48-22.log]
[testng] 01:48:22,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411add5e - End of configuration.
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS